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Dlux804 / McQuade-Chem-ML

Development of easy to use and reproducible ML scripts for chemistry.
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Json neo4j #71

Closed qle2 closed 4 years ago

qle2 commented 4 years ago

This PR contains all the files I created to import data, either directly from our core pipeline or from files in zip folders located in output, to Neo4j based on our current ontology (which is subject to change later on). While there are a few things from the ontology that I haven't included, please let me know if you find anything major missing. I also slightly modified some of our core files for my own needs so if I had broken anything, please let me know.

Screenshot_2020-07-15 Arrow Tool

current_ontology Above is the picture of our current ontology.

Steps for test runs:

Open Neo4j Desktop and start up a local graph database.
Set your password to 1234 . This is just how I set up my password for quick testing. We can come up with a universal password for all of our graphs later on. I think there's a way to disable passwords but I don't know how.
Go to plug-ins and install APOC 
For test runs:
    If you want to create graphs directly from the pipeline, run main.py. It can be run from main and from example_model. I suggest you create a small csv file for a quick run and review instead of waiting for 1000+ SMILES and even larger number of features. Once this PR is done, you can run it on the whole file and I'll address the problems that occurred when running in large CSVs.
    If you want to create graphs from your zip files, go to output_to_neo4j.py, uncomment the last line and run it. Again I suggest you have a small working example for reasons mentioned above.

In the files I created, I included documentation that explains: the objective of the script, the objective of the function and intent behind the function for each file.

Also @dickeygh, while I was designing this script, I only tested it on regression models. Please run classification models on CSVs that don't have any irregular SMILES and let me know if anything breaks

If you have any questions or concerns, I'll be happy to answer them

pep8speaks commented 4 years ago

Hello @qle2! Thanks for opening this PR. We checked the lines you've touched for PEP 8 issues, and found:

Line 6:80: E501 line too long (128 > 79 characters) Line 11:1: E302 expected 2 blank lines, found 1 Line 23:32: E127 continuation line over-indented for visual indent Line 29:80: E501 line too long (93 > 79 characters) Line 76:80: E501 line too long (86 > 79 characters) Line 137:80: E501 line too long (80 > 79 characters) Line 140:80: E501 line too long (115 > 79 characters) Line 164:80: E501 line too long (111 > 79 characters) Line 167:80: E501 line too long (97 > 79 characters) Line 172:80: E501 line too long (82 > 79 characters) Line 173:80: E501 line too long (85 > 79 characters) Line 178:80: E501 line too long (91 > 79 characters) Line 180:80: E501 line too long (99 > 79 characters) Line 198:80: E501 line too long (117 > 79 characters) Line 210:80: E501 line too long (94 > 79 characters) Line 211:1: W391 blank line at end of file

Line 5:1: E302 expected 2 blank lines, found 1 Line 17:80: E501 line too long (104 > 79 characters) Line 21:1: W391 blank line at end of file

Line 27:80: E501 line too long (90 > 79 characters) Line 32:35: E261 at least two spaces before inline comment Line 42:5: E265 block comment should start with '# ' Line 43:80: E501 line too long (151 > 79 characters) Line 44:80: E501 line too long (125 > 79 characters) Line 50:80: E501 line too long (80 > 79 characters) Line 55:55: E261 at least two spaces before inline comment Line 55:55: E262 inline comment should start with '# ' Line 79:1: E303 too many blank lines (3) Line 83:1: E302 expected 2 blank lines, found 3 Line 97:27: E203 whitespace before ':' Line 108:80: E501 line too long (101 > 79 characters) Line 110:80: E501 line too long (81 > 79 characters) Line 116:80: E501 line too long (120 > 79 characters) Line 133:80: E501 line too long (107 > 79 characters) Line 135:80: E501 line too long (89 > 79 characters) Line 139:27: E261 at least two spaces before inline comment Line 139:80: E501 line too long (83 > 79 characters) Line 143:80: E501 line too long (98 > 79 characters) Line 145:18: E222 multiple spaces after operator Line 150:80: E501 line too long (92 > 79 characters) Line 150:93: W291 trailing whitespace Line 151:80: E501 line too long (108 > 79 characters) Line 151:109: W291 trailing whitespace Line 152:80: E501 line too long (101 > 79 characters) Line 152:102: W291 trailing whitespace Line 154:1: W293 blank line contains whitespace Line 155:80: E501 line too long (113 > 79 characters) Line 156:80: E501 line too long (114 > 79 characters) Line 157:80: E501 line too long (111 > 79 characters) Line 157:112: W291 trailing whitespace Line 158:30: W291 trailing whitespace Line 160:80: E501 line too long (98 > 79 characters) Line 168:13: E303 too many blank lines (2) Line 168:28: E231 missing whitespace after ':' Line 170:80: E501 line too long (81 > 79 characters) Line 175:9: E303 too many blank lines (3) Line 184:80: E501 line too long (119 > 79 characters) Line 188:80: E501 line too long (87 > 79 characters) Line 202:80: E501 line too long (85 > 79 characters) Line 215:80: E501 line too long (86 > 79 characters) Line 224:17: E116 unexpected indentation (comment) Line 225:17: E116 unexpected indentation (comment) Line 226:80: E501 line too long (103 > 79 characters) Line 244:9: E303 too many blank lines (3) Line 256:5: E303 too many blank lines (2) Line 323:80: E501 line too long (84 > 79 characters) Line 328:1: E302 expected 2 blank lines, found 1 Line 331:80: E501 line too long (104 > 79 characters) Line 344:80: E501 line too long (92 > 79 characters) Line 345:80: E501 line too long (100 > 79 characters) Line 353:80: E501 line too long (95 > 79 characters) Line 354:80: E501 line too long (102 > 79 characters) Line 356:52: E261 at least two spaces before inline comment Line 356:80: E501 line too long (90 > 79 characters) Line 358:80: E501 line too long (104 > 79 characters) Line 360:80: E501 line too long (103 > 79 characters) Line 361:80: E501 line too long (92 > 79 characters) Line 364:80: E501 line too long (97 > 79 characters) Line 365:80: E501 line too long (85 > 79 characters) Line 367:80: E501 line too long (109 > 79 characters) Line 373:80: E501 line too long (89 > 79 characters) Line 374:80: E501 line too long (109 > 79 characters) Line 384:9: E303 too many blank lines (2) Line 388:9: E303 too many blank lines (2) Line 392:9: E303 too many blank lines (2) Line 393:80: E501 line too long (99 > 79 characters) Line 396:9: E303 too many blank lines (2) Line 396:80: E501 line too long (149 > 79 characters) Line 397:38: E231 missing whitespace after ',' Line 397:59: E231 missing whitespace after ',' Line 397:65: E231 missing whitespace after ',' Line 397:80: E501 line too long (147 > 79 characters) Line 399:80: E501 line too long (106 > 79 characters) Line 400:80: E501 line too long (91 > 79 characters) Line 404:9: E303 too many blank lines (2) Line 406:80: E501 line too long (93 > 79 characters) Line 410:80: E501 line too long (94 > 79 characters) Line 411:80: E501 line too long (97 > 79 characters) Line 412:20: E231 missing whitespace after ',' Line 417:46: E231 missing whitespace after ',' Line 420:37: E261 at least two spaces before inline comment Line 420:80: E501 line too long (92 > 79 characters) Line 423:5: E303 too many blank lines (2) Line 428:1: E303 too many blank lines (4) Line 440:23: E203 whitespace before ':' Line 444:1: E265 block comment should start with '# ' Line 445:80: E501 line too long (103 > 79 characters) Line 449:1: E303 too many blank lines (3) Line 460:19: W292 no newline at end of file Line 460:19: W292 no newline at end of file Line 460:19: W292 no newline at end of file

Line 43:80: E501 line too long (92 > 79 characters) Line 46:1: W391 blank line at end of file

Line 16:80: E501 line too long (97 > 79 characters) Line 27:76: E703 statement ends with a semicolon Line 29:80: E501 line too long (125 > 79 characters) Line 31:80: E501 line too long (84 > 79 characters) Line 47:27: E251 unexpected spaces around keyword / parameter equals Line 77:80: E501 line too long (101 > 79 characters) Line 116:80: E501 line too long (100 > 79 characters) Line 117:80: E501 line too long (119 > 79 characters) Line 118:80: E501 line too long (118 > 79 characters) Line 119:80: E501 line too long (128 > 79 characters) Line 120:80: E501 line too long (130 > 79 characters) Line 123:80: E501 line too long (102 > 79 characters) Line 124:80: E501 line too long (116 > 79 characters) Line 125:80: E501 line too long (118 > 79 characters) Line 126:80: E501 line too long (128 > 79 characters) Line 127:80: E501 line too long (130 > 79 characters) Line 140:80: E501 line too long (102 > 79 characters) Line 141:80: E501 line too long (120 > 79 characters) Line 142:80: E501 line too long (118 > 79 characters) Line 143:80: E501 line too long (112 > 79 characters) Line 144:80: E501 line too long (130 > 79 characters) Line 147:80: E501 line too long (104 > 79 characters) Line 148:80: E501 line too long (121 > 79 characters) Line 149:80: E501 line too long (118 > 79 characters) Line 150:80: E501 line too long (112 > 79 characters) Line 151:80: E501 line too long (130 > 79 characters) Line 168:80: E501 line too long (119 > 79 characters) Line 185:9: E116 unexpected indentation (comment) Line 185:80: E501 line too long (113 > 79 characters) Line 202:80: E501 line too long (83 > 79 characters) Line 202:80: E501 line too long (83 > 79 characters) Line 202:84: W292 no newline at end of file Line 202:84: W292 no newline at end of file Line 202:84: W292 no newline at end of file

Line 2:80: E501 line too long (92 > 79 characters) Line 20:80: E501 line too long (109 > 79 characters) Line 31:80: E501 line too long (116 > 79 characters) Line 32:80: E501 line too long (114 > 79 characters) Line 33:80: E501 line too long (118 > 79 characters) Line 37:80: E501 line too long (117 > 79 characters) Line 43:80: E501 line too long (80 > 79 characters) Line 44:80: E501 line too long (112 > 79 characters) Line 45:80: E501 line too long (118 > 79 characters) Line 46:80: E501 line too long (108 > 79 characters) Line 47:80: E501 line too long (117 > 79 characters) Line 62:80: E501 line too long (91 > 79 characters) Line 64:80: E501 line too long (103 > 79 characters) Line 65:80: E501 line too long (86 > 79 characters) Line 72:80: E501 line too long (87 > 79 characters) Line 77:68: W292 no newline at end of file

Line 16:1: E402 module level import not at top of file Line 59:79: E261 at least two spaces before inline comment Line 59:80: E262 inline comment should start with '# ' Line 59:80: E501 line too long (95 > 79 characters) Line 61:61: E261 at least two spaces before inline comment Line 61:80: E501 line too long (95 > 79 characters) Line 62:80: E501 line too long (94 > 79 characters) Line 63:80: E501 line too long (97 > 79 characters) Line 95:80: E501 line too long (86 > 79 characters) Line 140:80: E501 line too long (83 > 79 characters) Line 143:80: E501 line too long (82 > 79 characters) Line 175:43: E203 whitespace before ',' Line 175:44: E231 missing whitespace after ',' Line 175:54: E231 missing whitespace after ',' Line 175:58: E231 missing whitespace after ',' Line 175:80: E501 line too long (116 > 79 characters) Line 175:86: E251 unexpected spaces around keyword / parameter equals Line 175:88: E251 unexpected spaces around keyword / parameter equals Line 175:97: E251 unexpected spaces around keyword / parameter equals Line 175:99: E251 unexpected spaces around keyword / parameter equals Line 175:109: E251 unexpected spaces around keyword / parameter equals Line 175:111: E251 unexpected spaces around keyword / parameter equals

Line 28:19: E231 missing whitespace after ',' Line 28:80: E501 line too long (89 > 79 characters) Line 30:80: E501 line too long (90 > 79 characters) Line 58:32: E711 comparison to None should be 'if cond is None:' Line 69:15: W292 no newline at end of file

Line 40:1: W391 blank line at end of file

Line 2:80: E501 line too long (94 > 79 characters) Line 4:80: E501 line too long (86 > 79 characters) Line 17:1: E402 module level import not at top of file Line 18:1: E402 module level import not at top of file Line 22:80: E501 line too long (113 > 79 characters) Line 30:80: E501 line too long (96 > 79 characters) Line 39:80: E501 line too long (106 > 79 characters) Line 41:80: E501 line too long (107 > 79 characters) Line 42:80: E501 line too long (94 > 79 characters) Line 47:75: E261 at least two spaces before inline comment Line 47:80: E501 line too long (121 > 79 characters) Line 55:80: E501 line too long (109 > 79 characters) Line 58:9: E303 too many blank lines (2) Line 74:80: E501 line too long (144 > 79 characters) Line 74:83: E251 unexpected spaces around keyword / parameter equals Line 74:85: E251 unexpected spaces around keyword / parameter equals Line 74:92: E261 at least two spaces before inline comment Line 86:80: E501 line too long (98 > 79 characters) Line 88:80: E501 line too long (111 > 79 characters) Line 92:43: E261 at least two spaces before inline comment Line 92:80: E501 line too long (81 > 79 characters) Line 126:79: W292 no newline at end of file

Line 12:1: E302 expected 2 blank lines, found 1 Line 13:80: E501 line too long (98 > 79 characters) Line 15:8: E221 multiple spaces before operator Line 17:33: E231 missing whitespace after ',' Line 24:80: E501 line too long (87 > 79 characters) Line 30:60: E231 missing whitespace after ',' Line 39:80: E501 line too long (81 > 79 characters) Line 45:80: E501 line too long (101 > 79 characters)

Line 6:80: E501 line too long (89 > 79 characters) Line 7:80: E501 line too long (105 > 79 characters) Line 14:80: E501 line too long (119 > 79 characters) Line 17:80: E501 line too long (121 > 79 characters) Line 22:80: E501 line too long (97 > 79 characters) Line 25:80: E501 line too long (95 > 79 characters) Line 27:80: E501 line too long (81 > 79 characters) Line 29:80: E501 line too long (81 > 79 characters) Line 40:80: E501 line too long (91 > 79 characters) Line 41:80: E501 line too long (97 > 79 characters) Line 45:80: E501 line too long (106 > 79 characters) Line 46:80: E501 line too long (89 > 79 characters) Line 47:80: E501 line too long (92 > 79 characters) Line 48:80: E501 line too long (118 > 79 characters) Line 49:80: E501 line too long (111 > 79 characters) Line 50:80: E501 line too long (111 > 79 characters) Line 53:80: E501 line too long (120 > 79 characters) Line 54:80: E501 line too long (110 > 79 characters) Line 56:80: E501 line too long (115 > 79 characters) Line 65:80: E501 line too long (119 > 79 characters) Line 68:80: E501 line too long (124 > 79 characters) Line 69:80: E501 line too long (114 > 79 characters) Line 71:80: E501 line too long (99 > 79 characters) Line 72:80: E501 line too long (92 > 79 characters) Line 82:80: E501 line too long (105 > 79 characters) Line 83:80: E501 line too long (99 > 79 characters) Line 84:80: E501 line too long (86 > 79 characters) Line 85:80: E501 line too long (90 > 79 characters) Line 87:80: E501 line too long (113 > 79 characters) Line 89:80: E501 line too long (83 > 79 characters) Line 90:80: E501 line too long (84 > 79 characters) Line 93:80: E501 line too long (122 > 79 characters) Line 94:80: E501 line too long (95 > 79 characters) Line 96:80: E501 line too long (88 > 79 characters) Line 97:80: E501 line too long (101 > 79 characters) Line 98:80: E501 line too long (95 > 79 characters) Line 106:80: E501 line too long (109 > 79 characters) Line 111:20: W292 no newline at end of file

Line 2:80: E501 line too long (111 > 79 characters) Line 20:80: E501 line too long (84 > 79 characters) Line 21:80: E501 line too long (111 > 79 characters) Line 22:80: E501 line too long (112 > 79 characters) Line 29:80: E501 line too long (85 > 79 characters) Line 34:80: E501 line too long (100 > 79 characters) Line 35:80: E501 line too long (91 > 79 characters) Line 36:80: E501 line too long (97 > 79 characters) Line 41:80: E501 line too long (113 > 79 characters) Line 53:80: E501 line too long (93 > 79 characters) Line 61:80: E501 line too long (100 > 79 characters) Line 70:80: E501 line too long (83 > 79 characters) Line 71:80: E501 line too long (88 > 79 characters) Line 73:80: E501 line too long (105 > 79 characters) Line 74:80: E501 line too long (119 > 79 characters) Line 75:80: E501 line too long (119 > 79 characters) Line 76:80: E501 line too long (118 > 79 characters) Line 78:80: E501 line too long (103 > 79 characters) Line 79:80: E501 line too long (114 > 79 characters) Line 84:80: E501 line too long (111 > 79 characters) Line 88:80: E501 line too long (88 > 79 characters) Line 91:80: E501 line too long (90 > 79 characters) Line 98:1: W293 blank line contains whitespace Line 101:80: E501 line too long (115 > 79 characters) Line 102:80: E501 line too long (100 > 79 characters) Line 110:80: E501 line too long (116 > 79 characters) Line 115:80: E501 line too long (88 > 79 characters) Line 119:80: E501 line too long (103 > 79 characters) Line 122:80: E501 line too long (96 > 79 characters) Line 123:80: E501 line too long (89 > 79 characters) Line 124:80: E501 line too long (86 > 79 characters) Line 129:80: E501 line too long (94 > 79 characters) Line 134:80: E501 line too long (101 > 79 characters) Line 140:80: E501 line too long (85 > 79 characters) Line 145:80: E501 line too long (89 > 79 characters) Line 151:80: E501 line too long (83 > 79 characters) Line 153:80: E501 line too long (118 > 79 characters) Line 155:80: E501 line too long (86 > 79 characters) Line 158:80: E501 line too long (113 > 79 characters) Line 166:80: E501 line too long (97 > 79 characters) Line 168:80: E501 line too long (99 > 79 characters) Line 171:80: E501 line too long (116 > 79 characters) Line 173:1: W391 blank line at end of file

Line 2:80: E501 line too long (111 > 79 characters) Line 18:80: E501 line too long (113 > 79 characters) Line 30:80: E501 line too long (93 > 79 characters) Line 38:80: E501 line too long (100 > 79 characters) Line 47:80: E501 line too long (83 > 79 characters) Line 48:80: E501 line too long (88 > 79 characters) Line 50:80: E501 line too long (105 > 79 characters) Line 51:80: E501 line too long (119 > 79 characters) Line 52:80: E501 line too long (119 > 79 characters) Line 53:80: E501 line too long (118 > 79 characters) Line 55:80: E501 line too long (103 > 79 characters) Line 56:80: E501 line too long (114 > 79 characters) Line 63:80: E501 line too long (88 > 79 characters) Line 66:80: E501 line too long (90 > 79 characters) Line 76:80: E501 line too long (115 > 79 characters) Line 83:80: E501 line too long (116 > 79 characters) Line 88:80: E501 line too long (85 > 79 characters) Line 92:80: E501 line too long (103 > 79 characters) Line 95:80: E501 line too long (96 > 79 characters) Line 96:80: E501 line too long (89 > 79 characters) Line 97:80: E501 line too long (86 > 79 characters) Line 103:80: E501 line too long (109 > 79 characters) Line 108:80: E501 line too long (106 > 79 characters) Line 112:1: W293 blank line contains whitespace Line 114:80: E501 line too long (90 > 79 characters) Line 119:80: E501 line too long (102 > 79 characters) Line 125:80: E501 line too long (87 > 79 characters) Line 127:80: E501 line too long (122 > 79 characters) Line 129:80: E501 line too long (80 > 79 characters) Line 132:80: E501 line too long (113 > 79 characters) Line 140:80: E501 line too long (105 > 79 characters) Line 142:80: E501 line too long (111 > 79 characters) Line 145:80: E501 line too long (124 > 79 characters) Line 146:44: W292 no newline at end of file

Line 2:80: E501 line too long (119 > 79 characters) Line 22:80: E501 line too long (117 > 79 characters) Line 24:80: E501 line too long (80 > 79 characters) Line 27:80: E501 line too long (90 > 79 characters) Line 29:80: E501 line too long (80 > 79 characters) Line 32:80: E501 line too long (84 > 79 characters) Line 34:80: E501 line too long (80 > 79 characters) Line 39:80: E501 line too long (89 > 79 characters) Line 39:90: W291 trailing whitespace Line 40:80: E501 line too long (123 > 79 characters) Line 43:80: E501 line too long (124 > 79 characters) Line 44:80: E501 line too long (95 > 79 characters) Line 51:80: E501 line too long (106 > 79 characters) Line 52:80: E501 line too long (98 > 79 characters) Line 53:80: E501 line too long (94 > 79 characters) Line 54:36: E128 continuation line under-indented for visual indent Line 54:80: E501 line too long (82 > 79 characters) Line 56:80: E501 line too long (106 > 79 characters) Line 57:80: E501 line too long (98 > 79 characters) Line 58:80: E501 line too long (94 > 79 characters) Line 59:80: E501 line too long (88 > 79 characters) Line 61:80: E501 line too long (98 > 79 characters) Line 63:80: E501 line too long (87 > 79 characters) Line 67:80: E501 line too long (110 > 79 characters) Line 69:80: E501 line too long (89 > 79 characters) Line 73:80: E501 line too long (92 > 79 characters) Line 75:80: E501 line too long (83 > 79 characters) Line 78:80: E501 line too long (103 > 79 characters) Line 80:80: E501 line too long (92 > 79 characters) Line 83:80: E501 line too long (103 > 79 characters) Line 87:80: E501 line too long (98 > 79 characters) Line 88:80: E501 line too long (87 > 79 characters) Line 91:80: E501 line too long (105 > 79 characters) Line 93:80: E501 line too long (85 > 79 characters) Line 96:80: E501 line too long (111 > 79 characters) Line 98:80: E501 line too long (99 > 79 characters) Line 101:80: E501 line too long (101 > 79 characters) Line 108:80: E501 line too long (99 > 79 characters) Line 108:100: W291 trailing whitespace Line 110:20: E127 continuation line over-indented for visual indent Line 110:80: E501 line too long (94 > 79 characters) Line 113:80: E501 line too long (104 > 79 characters) Line 116:80: E501 line too long (84 > 79 characters) Line 117:80: E501 line too long (98 > 79 characters) Line 118:80: E501 line too long (103 > 79 characters) Line 119:1: W293 blank line contains whitespace Line 122:80: E501 line too long (100 > 79 characters) Line 122:101: W291 trailing whitespace Line 123:80: E501 line too long (94 > 79 characters) Line 124:80: E501 line too long (80 > 79 characters) Line 125:80: E501 line too long (117 > 79 characters) Line 129:80: E501 line too long (103 > 79 characters) Line 131:80: E501 line too long (102 > 79 characters) Line 132:80: E501 line too long (98 > 79 characters) Line 133:80: E501 line too long (84 > 79 characters) Line 138:80: E501 line too long (106 > 79 characters) Line 138:107: W291 trailing whitespace Line 141:80: E501 line too long (95 > 79 characters) Line 147:80: E501 line too long (114 > 79 characters) Line 148:80: E501 line too long (125 > 79 characters) Line 149:80: E501 line too long (108 > 79 characters) Line 154:80: E501 line too long (107 > 79 characters) Line 154:108: W291 trailing whitespace Line 155:80: E501 line too long (116 > 79 characters) Line 155:117: W291 trailing whitespace Line 157:23: E127 continuation line over-indented for visual indent Line 157:80: E501 line too long (105 > 79 characters) Line 158:32: E128 continuation line under-indented for visual indent Line 158:80: E501 line too long (88 > 79 characters) Line 159:1: W293 blank line contains whitespace Line 161:80: E501 line too long (94 > 79 characters) Line 161:95: W291 trailing whitespace Line 162:80: E501 line too long (102 > 79 characters) Line 163:80: E501 line too long (115 > 79 characters) Line 164:1: W293 blank line contains whitespace Line 168:80: E501 line too long (106 > 79 characters) Line 168:107: W291 trailing whitespace Line 169:80: E501 line too long (111 > 79 characters) Line 170:80: E501 line too long (88 > 79 characters) Line 173:80: E501 line too long (94 > 79 characters) Line 173:95: W291 trailing whitespace Line 176:80: E501 line too long (119 > 79 characters) Line 181:80: E501 line too long (100 > 79 characters) Line 182:80: E501 line too long (118 > 79 characters) Line 186:80: E501 line too long (113 > 79 characters)

Line 2:80: E501 line too long (115 > 79 characters) Line 20:80: E501 line too long (117 > 79 characters) Line 21:80: E501 line too long (119 > 79 characters) Line 22:80: E501 line too long (88 > 79 characters) Line 42:80: E501 line too long (115 > 79 characters) Line 43:80: E501 line too long (118 > 79 characters) Line 44:80: E501 line too long (120 > 79 characters) Line 45:80: E501 line too long (107 > 79 characters) Line 56:80: E501 line too long (89 > 79 characters) Line 57:80: E501 line too long (85 > 79 characters) Line 58:80: E501 line too long (89 > 79 characters) Line 59:80: E501 line too long (110 > 79 characters) Line 60:80: E501 line too long (120 > 79 characters) Line 62:80: E501 line too long (82 > 79 characters) Line 63:80: E501 line too long (99 > 79 characters) Line 65:80: E501 line too long (89 > 79 characters) Line 66:80: E501 line too long (106 > 79 characters) Line 73:80: E501 line too long (118 > 79 characters) Line 79:80: E501 line too long (87 > 79 characters) Line 86:80: E501 line too long (92 > 79 characters) Line 92:80: E501 line too long (112 > 79 characters)

Line 2:80: E501 line too long (104 > 79 characters) Line 14:80: E501 line too long (110 > 79 characters) Line 15:80: E501 line too long (117 > 79 characters) Line 16:80: E501 line too long (119 > 79 characters) Line 17:80: E501 line too long (114 > 79 characters) Line 27:80: E501 line too long (87 > 79 characters) Line 32:1: E303 too many blank lines (3) Line 34:80: E501 line too long (106 > 79 characters) Line 35:80: E501 line too long (117 > 79 characters) Line 36:80: E501 line too long (109 > 79 characters) Line 38:80: E501 line too long (101 > 79 characters) Line 39:80: E501 line too long (116 > 79 characters) Line 40:80: E501 line too long (115 > 79 characters) Line 41:80: E501 line too long (120 > 79 characters) Line 42:80: E501 line too long (117 > 79 characters) Line 48:80: E501 line too long (96 > 79 characters) Line 49:80: E501 line too long (98 > 79 characters) Line 51:80: E501 line too long (90 > 79 characters) Line 59:80: E501 line too long (107 > 79 characters) Line 61:80: E501 line too long (80 > 79 characters) Line 62:80: E501 line too long (112 > 79 characters) Line 64:80: E501 line too long (117 > 79 characters) Line 65:80: E501 line too long (121 > 79 characters) Line 71:80: E501 line too long (88 > 79 characters) Line 78:80: E501 line too long (83 > 79 characters) Line 79:80: E501 line too long (94 > 79 characters) Line 80:80: E501 line too long (92 > 79 characters) Line 82:80: E501 line too long (109 > 79 characters) Line 83:80: E501 line too long (100 > 79 characters)

Line 15:80: E501 line too long (99 > 79 characters) Line 16:80: E501 line too long (88 > 79 characters) Line 75:27: W605 invalid escape sequence '-' Line 75:30: W605 invalid escape sequence '\d' Line 78:80: E501 line too long (101 > 79 characters) Line 90:80: E501 line too long (80 > 79 characters) Line 100:80: E501 line too long (85 > 79 characters) Line 143:80: E501 line too long (98 > 79 characters) Line 175:80: E501 line too long (81 > 79 characters)

Line 22:1: E402 module level import not at top of file Line 23:1: E402 module level import not at top of file Line 24:1: E402 module level import not at top of file Line 29:14: E201 whitespace after '(' Line 29:23: E251 unexpected spaces around keyword / parameter equals Line 29:25: E251 unexpected spaces around keyword / parameter equals Line 29:37: E251 unexpected spaces around keyword / parameter equals Line 29:39: E251 unexpected spaces around keyword / parameter equals Line 29:57: E251 unexpected spaces around keyword / parameter equals Line 29:59: E251 unexpected spaces around keyword / parameter equals Line 29:80: E501 line too long (89 > 79 characters) Line 31:80: E501 line too long (104 > 79 characters) Line 35:80: E501 line too long (112 > 79 characters) Line 36:80: E501 line too long (87 > 79 characters) Line 37:80: E501 line too long (86 > 79 characters) Line 38:80: E501 line too long (118 > 79 characters) Line 39:80: E501 line too long (117 > 79 characters) Line 40:80: E501 line too long (103 > 79 characters) Line 46:80: E501 line too long (105 > 79 characters) Line 47:80: E501 line too long (100 > 79 characters) Line 50:80: E501 line too long (93 > 79 characters) Line 54:80: E501 line too long (118 > 79 characters) Line 57:80: E501 line too long (95 > 79 characters) Line 64:80: E501 line too long (92 > 79 characters) Line 74:80: E501 line too long (112 > 79 characters) Line 75:80: E501 line too long (82 > 79 characters) Line 79:80: E501 line too long (112 > 79 characters) Line 114:80: E501 line too long (94 > 79 characters) Line 116:80: E501 line too long (101 > 79 characters) Line 122:80: E501 line too long (82 > 79 characters) Line 137:80: E501 line too long (95 > 79 characters) Line 138:30: E231 missing whitespace after ',' Line 167:80: E501 line too long (114 > 79 characters) Line 172:80: E501 line too long (108 > 79 characters) Line 174:80: E501 line too long (83 > 79 characters) Line 177:8: W291 trailing whitespace Line 178:80: E501 line too long (80 > 79 characters) Line 179:80: E501 line too long (109 > 79 characters) Line 180:80: E501 line too long (98 > 79 characters) Line 181:80: E501 line too long (107 > 79 characters) Line 184:80: E501 line too long (84 > 79 characters) Line 190:80: E501 line too long (108 > 79 characters) Line 197:80: E501 line too long (115 > 79 characters) Line 213:1: W391 blank line at end of file

Line 2:80: E501 line too long (119 > 79 characters) Line 17:80: E501 line too long (94 > 79 characters) Line 18:80: E501 line too long (116 > 79 characters) Line 19:80: E501 line too long (114 > 79 characters) Line 20:80: E501 line too long (113 > 79 characters) Line 21:80: E501 line too long (114 > 79 characters) Line 25:80: E501 line too long (103 > 79 characters) Line 28:80: E501 line too long (117 > 79 characters) Line 30:80: E501 line too long (80 > 79 characters) Line 31:1: W293 blank line contains whitespace Line 33:80: E501 line too long (90 > 79 characters) Line 35:80: E501 line too long (80 > 79 characters) Line 38:80: E501 line too long (84 > 79 characters) Line 40:80: E501 line too long (80 > 79 characters) Line 41:1: W293 blank line contains whitespace Line 45:80: E501 line too long (85 > 79 characters) Line 45:86: W291 trailing whitespace Line 46:80: E501 line too long (119 > 79 characters) Line 49:80: E501 line too long (111 > 79 characters) Line 50:80: E501 line too long (91 > 79 characters) Line 56:80: E501 line too long (103 > 79 characters) Line 57:80: E501 line too long (94 > 79 characters) Line 58:80: E501 line too long (118 > 79 characters) Line 60:80: E501 line too long (99 > 79 characters) Line 62:80: E501 line too long (87 > 79 characters) Line 66:80: E501 line too long (111 > 79 characters) Line 68:80: E501 line too long (89 > 79 characters) Line 69:10: E261 at least two spaces before inline comment Line 70:80: E501 line too long (87 > 79 characters) Line 74:80: E501 line too long (93 > 79 characters) Line 79:80: E501 line too long (104 > 79 characters) Line 81:80: E501 line too long (85 > 79 characters) Line 84:80: E501 line too long (103 > 79 characters) Line 84:104: W291 trailing whitespace Line 85:80: E501 line too long (118 > 79 characters) Line 86:80: E501 line too long (98 > 79 characters) Line 87:80: E501 line too long (87 > 79 characters) Line 90:80: E501 line too long (99 > 79 characters) Line 90:100: W291 trailing whitespace Line 91:80: E501 line too long (88 > 79 characters) Line 92:80: E501 line too long (118 > 79 characters) Line 95:80: E501 line too long (112 > 79 characters) Line 97:80: E501 line too long (94 > 79 characters) Line 102:80: E501 line too long (103 > 79 characters) Line 102:104: W291 trailing whitespace Line 104:80: E501 line too long (90 > 79 characters) Line 107:80: E501 line too long (103 > 79 characters) Line 107:104: W291 trailing whitespace Line 108:80: E501 line too long (98 > 79 characters) Line 108:99: W291 trailing whitespace Line 109:80: E501 line too long (89 > 79 characters) Line 110:80: E501 line too long (85 > 79 characters) Line 111:80: E501 line too long (98 > 79 characters) Line 112:80: E501 line too long (97 > 79 characters) Line 117:80: E501 line too long (96 > 79 characters) Line 117:97: W291 trailing whitespace Line 118:80: E501 line too long (90 > 79 characters) Line 120:31: E231 missing whitespace after ':' Line 120:80: E501 line too long (108 > 79 characters) Line 126:80: E501 line too long (102 > 79 characters) Line 126:103: W291 trailing whitespace Line 129:20: E127 continuation line over-indented for visual indent Line 129:80: E501 line too long (105 > 79 characters) Line 130:31: E128 continuation line under-indented for visual indent Line 135:80: E501 line too long (110 > 79 characters) Line 136:80: E501 line too long (121 > 79 characters) Line 137:80: E501 line too long (94 > 79 characters) Line 141:80: E501 line too long (107 > 79 characters) Line 141:108: W291 trailing whitespace Line 142:80: E501 line too long (113 > 79 characters) Line 142:114: W291 trailing whitespace Line 144:80: E501 line too long (102 > 79 characters) Line 145:80: E501 line too long (88 > 79 characters) Line 148:80: E501 line too long (94 > 79 characters) Line 148:95: W291 trailing whitespace Line 149:80: E501 line too long (94 > 79 characters) Line 150:80: E501 line too long (115 > 79 characters) Line 155:80: E501 line too long (98 > 79 characters) Line 155:99: W291 trailing whitespace Line 156:80: E501 line too long (103 > 79 characters) Line 157:80: E501 line too long (94 > 79 characters) Line 161:80: E501 line too long (94 > 79 characters) Line 161:95: W291 trailing whitespace Line 164:59: E231 missing whitespace after ':' Line 164:80: E501 line too long (106 > 79 characters) Line 169:80: E501 line too long (100 > 79 characters) Line 170:80: E501 line too long (118 > 79 characters) Line 174:80: E501 line too long (113 > 79 characters) Line 175:80: E501 line too long (89 > 79 characters) Line 177:77: W292 no newline at end of file

Line 32:80: E501 line too long (90 > 79 characters) Line 41:80: E501 line too long (100 > 79 characters) Line 64:80: E501 line too long (101 > 79 characters) Line 65:80: E501 line too long (100 > 79 characters) Line 66:80: E501 line too long (98 > 79 characters) Line 67:80: E501 line too long (102 > 79 characters) Line 73:80: E501 line too long (93 > 79 characters) Line 80:80: E501 line too long (90 > 79 characters) Line 93:80: E501 line too long (95 > 79 characters) Line 96:80: E501 line too long (85 > 79 characters) Line 99:80: E501 line too long (86 > 79 characters) Line 102:80: E501 line too long (119 > 79 characters) Line 116:80: E501 line too long (84 > 79 characters) Line 127:80: E501 line too long (87 > 79 characters) Line 149:80: E501 line too long (84 > 79 characters) Line 165:80: E501 line too long (107 > 79 characters) Line 167:80: E501 line too long (101 > 79 characters) Line 168:80: E501 line too long (84 > 79 characters) Line 181:80: E501 line too long (91 > 79 characters) Line 185:1: W391 blank line at end of file

Line 5:80: E501 line too long (137 > 79 characters) Line 12:19: E231 missing whitespace after ',' Line 14:80: E501 line too long (83 > 79 characters) Line 20:80: E501 line too long (89 > 79 characters) Line 31:80: E501 line too long (80 > 79 characters) Line 34:80: E501 line too long (81 > 79 characters) Line 35:80: E501 line too long (89 > 79 characters) Line 78:80: E501 line too long (83 > 79 characters) Line 85:80: E501 line too long (89 > 79 characters) Line 87:23: E231 missing whitespace after ',' Line 87:25: E231 missing whitespace after ',' Line 88:5: E265 block comment should start with '# ' Line 105:57: E261 at least two spaces before inline comment Line 105:80: E501 line too long (184 > 79 characters) Line 107:80: E501 line too long (106 > 79 characters) Line 111:80: E501 line too long (101 > 79 characters) Line 112:80: E501 line too long (80 > 79 characters) Line 149:8: E131 continuation line unaligned for hanging indent Line 166:80: E501 line too long (94 > 79 characters) Line 167:80: E501 line too long (99 > 79 characters) Line 170:80: E501 line too long (95 > 79 characters) Line 171:80: E501 line too long (94 > 79 characters) Line 177:1: W391 blank line at end of file

Line 21:80: E501 line too long (90 > 79 characters) Line 28:9: E265 block comment should start with '# ' Line 28:80: E501 line too long (82 > 79 characters) Line 31:9: E303 too many blank lines (2) Line 32:9: E265 block comment should start with '# ' Line 32:80: E501 line too long (107 > 79 characters) Line 41:9: E303 too many blank lines (2) Line 42:80: E501 line too long (81 > 79 characters) Line 44:22: E261 at least two spaces before inline comment Line 44:22: E262 inline comment should start with '# ' Line 44:80: E501 line too long (111 > 79 characters) Line 46:80: E501 line too long (87 > 79 characters) Line 57:80: E501 line too long (91 > 79 characters) Line 59:80: E501 line too long (85 > 79 characters) Line 60:18: E128 continuation line under-indented for visual indent Line 62:80: E501 line too long (85 > 79 characters) Line 65:80: E501 line too long (85 > 79 characters) Line 66:18: E128 continuation line under-indented for visual indent Line 70:17: E117 over-indented Line 70:17: E303 too many blank lines (2) Line 71:54: E261 at least two spaces before inline comment Line 71:80: E501 line too long (84 > 79 characters) Line 72:80: E501 line too long (115 > 79 characters) Line 78:80: E501 line too long (85 > 79 characters) Line 79:80: E501 line too long (113 > 79 characters) Line 80:80: E501 line too long (80 > 79 characters) Line 93:80: E501 line too long (85 > 79 characters) Line 101:80: E501 line too long (90 > 79 characters) Line 103:80: E501 line too long (237 > 79 characters) Line 104:80: E501 line too long (204 > 79 characters) Line 105:80: E501 line too long (214 > 79 characters) Line 106:80: E501 line too long (208 > 79 characters) Line 107:80: E501 line too long (196 > 79 characters) Line 108:80: E501 line too long (116 > 79 characters) Line 116:80: E501 line too long (91 > 79 characters) Line 122:80: E501 line too long (83 > 79 characters) Line 124:80: E501 line too long (89 > 79 characters) Line 125:80: E501 line too long (82 > 79 characters) Line 137:80: E501 line too long (92 > 79 characters) Line 143:80: E501 line too long (96 > 79 characters) Line 144:80: E501 line too long (92 > 79 characters) Line 149:80: E501 line too long (95 > 79 characters) Line 153:80: E501 line too long (103 > 79 characters) Line 179:80: E501 line too long (89 > 79 characters) Line 184:80: E501 line too long (83 > 79 characters) Line 199:6: E114 indentation is not a multiple of four (comment) Line 199:6: E117 over-indented (comment)

Line 13:80: E501 line too long (80 > 79 characters) Line 23:80: E501 line too long (113 > 79 characters) Line 24:80: E501 line too long (89 > 79 characters) Line 34:80: E501 line too long (98 > 79 characters) Line 36:80: E501 line too long (114 > 79 characters) Line 44:80: E501 line too long (123 > 79 characters) Line 45:80: E501 line too long (94 > 79 characters) Line 51:80: E501 line too long (121 > 79 characters) Line 65:80: E501 line too long (118 > 79 characters) Line 67:80: E501 line too long (122 > 79 characters) Line 94:80: E501 line too long (116 > 79 characters) Line 95:80: E501 line too long (81 > 79 characters) Line 100:80: E501 line too long (113 > 79 characters) Line 115:80: E501 line too long (114 > 79 characters) Line 117:80: E501 line too long (122 > 79 characters) Line 118:80: E501 line too long (121 > 79 characters) Line 119:80: E501 line too long (89 > 79 characters) Line 124:80: E501 line too long (113 > 79 characters) Line 133:80: E501 line too long (113 > 79 characters) Line 135:80: E501 line too long (122 > 79 characters) Line 136:80: E501 line too long (121 > 79 characters) Line 137:80: E501 line too long (89 > 79 characters) Line 142:80: E501 line too long (121 > 79 characters)

Line 10:80: E501 line too long (80 > 79 characters) Line 17:80: E501 line too long (102 > 79 characters) Line 23:80: E501 line too long (111 > 79 characters) Line 27:80: E501 line too long (122 > 79 characters) Line 38:80: E501 line too long (106 > 79 characters) Line 47:80: E501 line too long (122 > 79 characters) Line 58:80: E501 line too long (82 > 79 characters) Line 60:80: E501 line too long (82 > 79 characters) Line 66:80: E501 line too long (92 > 79 characters) Line 76:80: E501 line too long (108 > 79 characters) Line 80:80: E501 line too long (116 > 79 characters) Line 82:80: E501 line too long (86 > 79 characters) Line 84:80: E501 line too long (86 > 79 characters) Line 86:80: E501 line too long (89 > 79 characters) Line 88:80: E501 line too long (86 > 79 characters) Line 90:80: E501 line too long (86 > 79 characters) Line 94:80: E501 line too long (99 > 79 characters) Line 107:80: E501 line too long (114 > 79 characters) Line 109:80: E501 line too long (86 > 79 characters) Line 111:80: E501 line too long (83 > 79 characters) Line 113:44: W292 no newline at end of file Line 113:44: W292 no newline at end of file Line 113:44: W292 no newline at end of file

Line 9:80: E501 line too long (80 > 79 characters) Line 21:80: E501 line too long (122 > 79 characters) Line 22:80: E501 line too long (120 > 79 characters) Line 30:80: E501 line too long (117 > 79 characters) Line 37:80: E501 line too long (84 > 79 characters) Line 45:80: E501 line too long (117 > 79 characters) Line 46:80: E501 line too long (95 > 79 characters) Line 47:80: E501 line too long (97 > 79 characters) Line 51:80: E501 line too long (83 > 79 characters) Line 59:80: E501 line too long (155 > 79 characters) Line 60:80: E501 line too long (95 > 79 characters) Line 61:80: E501 line too long (97 > 79 characters)

Line 7:80: E501 line too long (80 > 79 characters) Line 18:80: E501 line too long (117 > 79 characters) Line 20:80: E501 line too long (116 > 79 characters)

Line 10:80: E501 line too long (80 > 79 characters) Line 23:80: E501 line too long (113 > 79 characters) Line 24:80: E501 line too long (89 > 79 characters) Line 34:80: E501 line too long (98 > 79 characters) Line 36:80: E501 line too long (114 > 79 characters) Line 43:80: E501 line too long (106 > 79 characters) Line 44:80: E501 line too long (121 > 79 characters) Line 50:80: E501 line too long (83 > 79 characters) Line 51:80: E501 line too long (99 > 79 characters) Line 60:80: E501 line too long (109 > 79 characters) Line 65:80: E501 line too long (102 > 79 characters) Line 66:80: E501 line too long (99 > 79 characters)