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DoaneAS / rseqc

Automatically exported from code.google.com/p/rseqc
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setup pretends to install external stuff #18

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
Hi, we're trying to package rseqc for our debian based HPC. Package builds (if 
we don't use our cython but let setup do it's stuff), but is not installable 
because it also installs, apart 
/usr/lib/python2.7/dist-packages/RSeQC-2.3.4.egg-info/ stuff which is fine, 
something else:

/usr/lib/python2.7/dist-packages/pysam/
/usr/lib/python2.7/dist-packages/qcmodule/
/usr/lib/python2.7/dist-packages/bx/

Our question is: if we patch setup.py for installation skip of pysam 
0.6/0.1.18/0.2.5 (as per pysam/version.py) is ok to let rseqc use pysam 
0.7/0.1.18/0.2.6 or bad things will happen ?

Thank you in advance, cheers

Original issue reported on code.google.com by bara...@gmail.com on 21 Jan 2013 at 11:33

GoogleCodeExporter commented 9 years ago 
We are not sure if RSeQC would work with pysam0.7 or not. But we will upgrade 
pysam to version 0.7 and test all modules. 

Thanks

Original comment by wangligu...@gmail.com on 5 Feb 2013 at 6:50