Error compiling Cython file:

I am unable to install RSeQC-2.3.4 on Fedora17 64 bit

What steps will reproduce the problem?
1. run install command: python setup.py install --root=/app/RSeQC-2.3.4

What is the expected output? What do you see instead?

running install
running build
running build_py
running build_ext
skipping 'lib/bx/bitset.c' Cython extension (up-to-date)
skipping 'lib/bx/intervals/intersection.c' Cython extension (up-to-date)
skipping 'lib/bx/align/_core.c' Cython extension (up-to-date)
skipping 'lib/bx/seq/_nib.c' Cython extension (up-to-date)
skipping 'lib/bx/seq/_twobit.c' Cython extension (up-to-date)
skipping 'lib/bx/_seqmapping.c' Cython extension (up-to-date)
skipping 'lib/bx/misc/bgzf.c' Cython extension (up-to-date)
skipping 'lib/bx/intervals/cluster.c' Cython extension (up-to-date)
skipping 'lib/bx/pwm/_position_weight_matrix.c' Cython extension (up-to-date)
skipping 'lib/bx/motif/_pwm.c' Cython extension (up-to-date)
cythoning lib/bx/arrays/array_tree.pyx to lib/bx/arrays/array_tree.c

Error compiling Cython file:
------------------------------------------------------------
...

import numpy
from numpy import *
cimport numpy

cimport bx.arrays.wiggle
       ^
------------------------------------------------------------

lib/bx/arrays/array_tree.pyx:9:8: 'bx.arrays.wiggle.pxd' not found
building 'bx.arrays.array_tree' extension
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 
-fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic 
-D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 
-fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic 
-D_GNU_SOURCE -fPIC -fwrapv -fPIC 
-I/usr/lib64/python2.7/site-packages/numpy/core/include 
-I/usr/include/python2.7 -c lib/bx/arrays/array_tree.c -o 
build/temp.linux-x86_64-2.7/lib/bx/arrays/array_tree.o
lib/bx/arrays/array_tree.c:1:2: error: #error Do not use this file, it is the 
result of a failed Cython compilation.
error: command 'gcc' failed with exit status 1

What version of the product are you using? On what operating system?

RSeQC-2.3.4
Original issue reported on code.google.com by brghim...@gmail.com on 13 Feb 2013 at 9:48
DoaneAS / rseqc

Error compiling Cython file: #19
