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Donders-Institute / bidscoin

BIDScoin converts your source-level neuroimaging data to BIDS
https://bidscoin.readthedocs.io
GNU General Public License v3.0
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documentation: program name #179

Closed michaelf500 closed 1 year ago

michaelf500 commented 1 year ago

The documentation on https://bidscoin.readthedocs.io/en/stable/installation.html#testing-bidscoin

has examples of how to run 'bidscoin' eg $ bidscoin -t # Test with the default template bidsmap

However, there does not seem (in BIDScoin-version: 3.0.8) to be a bidscoin executable, just bidscoiner.

Maybe the documentation should be changed?

marcelzwiers commented 1 year ago

Hi Michael,

The link you are using is for v4.0.0, for the documentation of v3.0.8 you should go to (the link is there on the bottom of the docs menu):

https://bidscoin.readthedocs.io/en/3.0.8/

Best, Marcel

michaelf500 commented 1 year ago

Hi Marcel

Thanks, I get it. However, 3.08 is what I get with running pip install bidscoin, so I assumed that was the latest version.

Best wishes

Michael

On Fri, 14 Apr 2023 at 10:57, Marcel Zwiers @.***> wrote:

Hi Michael,

The link you are using is for v4.0.0, for the documentation of v3.0.8 you should go to (the link is there on the bottom of the docs menu):

https://bidscoin.readthedocs.io/en/3.0.8/

Best, Marcel

— Reply to this email directly, view it on GitHub https://github.com/Donders-Institute/bidscoin/issues/179#issuecomment-1508258701, or unsubscribe https://github.com/notifications/unsubscribe-auth/AFUQPCWVTWLCV76WC25KFJDXBENQPANCNFSM6AAAAAAW6GDFIM . You are receiving this because you authored the thread.Message ID: @.***>

marcelzwiers commented 1 year ago

That very strange because the latest version on pypi is 4.0.0: https://pypi.org/project/bidscoin/

Can you try pip install --upgrade bidscoin? Or, if that doesn't help pip install --force-reinstall bidscoin?

michaelf500 commented 1 year ago

Hi Marcel

I still get 3.08

However, I realise that I am using an old version of python (Python 3.6.9) on Ubuntu 18.04 which might be contributing to the problem.

I did try installing bidscoin 4.0.0 by downloading from the github, and I get an error message relating to not finding a recent version of setuptools.

Best wishes

Michael

On Fri, 14 Apr 2023 at 11:07, Marcel Zwiers @.***> wrote:

That very strange because the latest version on pypi is 4.0.0: https://pypi.org/project/bidscoin/

Can you try pip install --upgrade bidscoin? Or, if that doesn't help pip install --force-reinstall bidscoin?

— Reply to this email directly, view it on GitHub https://github.com/Donders-Institute/bidscoin/issues/179#issuecomment-1508271519, or unsubscribe https://github.com/notifications/unsubscribe-auth/AFUQPCR6PJRCWS4URCVKJBDXBEOULANCNFSM6AAAAAAW6GDFIM . You are receiving this because you authored the thread.Message ID: @.***>

marcelzwiers commented 1 year ago

That makes sense, I think that solves it (let me know if things don't work out for you with python >= 3.8)