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EBI-Metagenomics / genomes-catalogue-pipeline

MGnify genome analysis pipeline
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Fixed path to modules #45

Closed tgurbich closed 1 year ago

tgurbich commented 1 year ago

We moved get_ENA_metadata.py and utils.py to the bin folder which broke fetch_ena.py and fetch_ncbi.py. Added relative paths to both scripts to fetch the modules.

mberacochea commented 1 year ago

Wouldn't be easier to move those scripts to the bin folder?

tgurbich commented 1 year ago

Moved scripts to bin.

mberacochea commented 1 year ago

Moved scripts to bin.

Perfect. I've added a copy of the retry library, I just copied the library directly. The library is old and deprecated, so we should migrate to a different one. For now, and as the library only needs the python standard library, I've copied the source code into the bin folder.