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EBI-Metagenomics / genomes-catalogue-pipeline

MGnify genome analysis pipeline
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Per genome annotation #7

Closed KateSakharova closed 2 years ago

KateSakharova commented 3 years ago

First step for post-processing. Script separates Eggnog and IPS annotations per genome. Test: Input: mmseq size: 630 388 544 lines eggnog: 10 294 670 lines ips: 76 253 313 lines Test on CODON: 22G, 1h Toil: 1.5h

Default Cores: 1  Default Memory: 97656250K
Max Cores: 9.22337e+18
Total Clock: 152.93  Total Runtime: 5300.89
Worker
    Count |                                    Time* |                                         Clock |                                               Wait |                                   Memory 
        n |      min    med*     ave     max   total |       min      med      ave      max    total |        min       med       ave       max     total |      min     med     ave     max   total 
        1 |  5258.44 5258.44 5258.44 5258.44 5258.44 |  59608.95 59608.95 59608.95 59608.95 59608.95 |  -54350.50 -54350.50 -54350.50 -54350.50 -54350.50 | 23084308K23084308K23084308K23084308K23084308K
Job
 Worker Jobs  |     min    med    ave    max
              |       1      1      1      1
    Count |                                    Time* |                                         Clock |                                               Wait |                                   Memory 
        n |      min    med*     ave     max   total |       min      med      ave      max    total |        min       med       ave       max     total |      min     med     ave     max   total 
        1 |  5258.29 5258.29 5258.29 5258.29 5258.29 |  59608.81 59608.81 59608.81 59608.81 59608.81 |  -54350.52 -54350.52 -54350.52 -54350.52 -54350.52 | 23084308K23084308K23084308K23084308K23084308K
 make_per_genome_annotations.cwl
    Count |                                    Time* |                                         Clock |                                               Wait |                                   Memory 
        n |      min    med*     ave     max   total |       min      med      ave      max    total |        min       med       ave       max     total |      min     med     ave     max   total 
        1 |  5258.29 5258.29 5258.29 5258.29 5258.29 |  59608.81 59608.81 59608.81 59608.81 59608.81 |  -54350.52 -54350.52 -54350.52 -54350.52 -54350.52 | 23084308K23084308K23084308K23084308K23084308K
KateSakharova commented 2 years ago

Changes work in production