Open yingsun-ucsd opened 1 month ago
I'm new to EGA and have successfully downloaded datasets. However, I noticed that I only receive BAM files. Is it possible to download raw FASTQ files instead? If so, could you please guide me on how to access them?
pyega3 -cf credential.json fetch EGAD<NUM> --output-dir ./EGAD<NUM>/ &
Example of files I got: EGAD00001003947/EGAF00001842978/: human_islet_11.bam human_islet_11.bam.md5
Also, even I received bam files, the log had some error in. I am not sure what's going on there. Log attached. pyega3_output.log
Thank you so much!
I'm new to EGA and have successfully downloaded datasets. However, I noticed that I only receive BAM files. Is it possible to download raw FASTQ files instead? If so, could you please guide me on how to access them?
pyega3 -cf credential.json fetch EGAD<NUM> --output-dir ./EGAD<NUM>/ &Example of files I got: EGAD00001003947/EGAF00001842978/: human_islet_11.bam human_islet_11.bam.md5
Also, even I received bam files, the log had some error in. I am not sure what's going on there. Log attached. pyega3_output.log
Thank you so much!