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EI-CoreBioinformatics
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portcullis
Splice junction analysis and filtering from BAM files
https://ei-corebioinformatics.github.io/portcullis/
GNU General Public License v3.0
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Portcullis filter dies if the output folder does not exist
#16
lucventurini
closed
8 years ago
2
Create subfolders for -o options
#15
lucventurini
closed
8 years ago
3
Link/Copy BAM index as well if present during prep
#14
lucventurini
closed
9 years ago
1
Incorrect strand assigned to junctions
#13
lucventurini
closed
9 years ago
9
Add "assume sorted" option to prep/full
#12
lucventurini
closed
9 years ago
4
No linking option in portcullis full
#11
lucventurini
closed
9 years ago
2
Reconsider how analysis of regions flanking a junction work
#10
maplesond
closed
5 years ago
1
Change interface to filter tool.
#9
maplesond
closed
9 years ago
1
New metric: # MSRs in junction
#8
maplesond
closed
10 years ago
1
Dig more information from the BAM file.
#7
maplesond
closed
9 years ago
2
Create documentation
#6
maplesond
closed
8 years ago
1
Output BAM containing spliced reads from junc and filter steps
#5
maplesond
closed
9 years ago
1
Add relative intron length as a new metric
#4
maplesond
closed
8 years ago
2
Unit test resources not copied into distributable
#3
maplesond
closed
10 years ago
1
Use normal bam indexing rather than bamtools indexing
#2
maplesond
closed
10 years ago
1
Add dependency on bamtools
#1
maplesond
closed
10 years ago
0
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