ELIFE-ASU ecg issues - Githubissues

ELIFE-ASU / ecg

Pulling information from biological databases, and converting it into easy to use gmls for network science.

MIT License

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issues

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updated minimal gene threshold: 13540 for metagenome, fixed error for…

#34 vmierzej closed 6 months ago
0
Implement A la carte updating of JGI data

#33 colemathis opened 11 months ago
0
Merge Camerian's changes from A la carte into master

#32 colemathis opened 11 months ago
0
Incorporate filtering

#31 colemathis closed 11 months ago
0
Merge Bradly Changes into current work

#30 colemathis closed 2 years ago
0
JGI Requires Chromedriver

#29 colemathis opened 2 years ago
0
CM/update readme

#28 colemathis closed 2 years ago
0
add to README.md: simplified stepwise installation instructions

#27 camerianm closed 2 years ago
1
Plethora of style fixes and squashing of bugs to update the old script.

#26 bxk334 closed 2 years ago
0
Testing a change to setup.py so I can check a merge request

#25 colemathis closed 3 years ago
1
JGI.py fixes

#24 bxk334 closed 4 years ago
1
Added keys words for metagenomes to _get_biosystem_eclist

#23 thyamu opened 4 years ago
0
Add lines to deal with exception for KeyError

#22 thyamu closed 4 years ago
1
Fix metagenome JGI scraping

#21 hbsmith opened 4 years ago
0
add ability to make KEGG graph and reaction list directly (no jgi jsons required)

#20 hbsmith opened 4 years ago
0
add element info during/after KEGG retrieval

#19 hbsmith closed 4 years ago
1
Bkaras1

#18 bxk334 closed 5 years ago
0
Documentation about post-processing of KEGG and JGI data to construct graphs

#17 thyamu closed 4 years ago
2
Fix full_url to correctly save as a url

#16 bxk334 opened 5 years ago
0
Change CLI from docopt to argparse

#15 hbsmith opened 5 years ago
0
move CLI out of kegg.py, jgi.py, ecg.py and into script/ecg.py

#14 hbsmith opened 5 years ago
0
Provide the list of all possible arguments

#13 thyamu closed 5 years ago
1
default for the database

#12 thyamu closed 5 years ago
1
cell fragments have taxon object ID, not taxon ID

#11 hbsmith closed 5 years ago
1
Add ability to read in a json of organism_urls from command line

#10 hbsmith opened 5 years ago
0
Add method to update data from a JGI domain

#9 hbsmith opened 5 years ago
0
raising warning before scraping causes multiple tqdm bars in jupyter

#8 hbsmith opened 5 years ago
2
Provide shorter version of options in CLI

#7 thyamu opened 5 years ago
0
ADD more information for the progress bars for downloading KEGG and other db

#6 thyamu opened 5 years ago
1
Add information about pre-required packages to README.md

#5 thyamu closed 5 years ago
1
updating writes full lists to the version update field in master.json

#4 hbsmith closed 5 years ago
0
updating doesn't correctly rewrite version.json

#3 hbsmith closed 5 years ago
0
Update local omic database with only new and modified genomes

#2 hbsmith opened 5 years ago
0
Check if an EC number was changed/updated

#1 hbsmith opened 5 years ago
0