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ELIFE-ASU / ecg

Pulling information from biological databases, and converting it into easy to use gmls for network science.
MIT License
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Documentation about post-processing of KEGG and JGI data to construct graphs #17

Closed thyamu closed 5 years ago

thyamu commented 5 years ago

To convert EC lists to graphs

  1. rxn_edges.json
  2. rxn_detalied_json_dir
  3. genome_rxn_list
hbsmith commented 5 years ago

I'm working on an update to address this. Right now, we don't actually generate or use networkx graphs or gmls as part of the pipeline for network expansion, but it's useful to have anyways.

hbsmith commented 5 years ago

This is closed in the latest batch of commits, with the update to the README.md in 637169a4e93f81ec5f1b22ea96a278715a350c35.