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EPPIcenter / mad4hatter

https://eppicenter.github.io/mad4hatter/
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SNPs that show in more than 1 amplicon #88

Open andres-ad opened 1 year ago

andres-ad commented 1 year ago

Make a decision on how to use the data from overlapping amplicons. Right now only one is used, which is an issue if they have conflicting information, and also if only 1 pool is used and the marker is not in the amplicon in the list

andres-ad commented 1 year ago

requires remaking the resmarker info file to id ALL pools that contain a given SNP. in the resmarker module use the information from both (add up the reads from either pool, eventually explicitly deal with conflicting calls)