fsurdat file needed for NEON MOAB site

[samsrabin]

I didn't want to open a whole new issue for this BUT... In #2500 this test changed from FAIL (expected) to PEND in the SHAREDLIB_BUILD phase SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Bgc.derecho_gnu.clm-NEON-MOAB--clm-PRISM with this error CLMBuildNamelist::add_default() : No default value found for fsurdat.

Same on izumi: SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Bgc.izumi_nag.clm-NEON-MOAB--clm-PRISM

Originally posted by @slevis-lmwg in https://github.com/ESCOMP/CTSM/issues/2310#issuecomment-2372367434

---

I'm elevating this to its own issue because now the cs.status output is confusing, and the expected failure isn't detected.

[samsrabin]

Note that the cs.status output will make more sense—i.e., SETUP will be marked as FAIL—once we bring in cime6.1.27 or later; see https://github.com/ESMCI/cime/pull/4681.

[slevis-lmwg]

The file already exists here (78pft) /glade/campaign/cesm/cesmdata/inputdata/lnd/clm2/surfdata_esmf/NEON/ctsm5.3.0/surfdata_1x1_NEON_MOAB_hist_2000_78pfts_c240912.nc and here (16pft) .../16PFT_mixed/surfdata_1x1_NEON_MOAB_hist_2000_16pfts_c240912.nc

[samsrabin]

So I guess something just needs to be changed in the XML for the test to pick that up?

[slevis-lmwg]

@samsrabin this sounds simple, although @olyson and I looked at this for a few minutes this morning and found: 1) The fsurdat setting seems correct in namelist_defaults_ctsm.xml 2) Other neon tests work suggesting that this test does something different that causes it to break...

[slevis-lmwg]

Additional info. This test works: SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Bgc.derecho_gnu.clm-NEON-MOAB

[samsrabin]

Ah, so it seems like the addition of the PRISM testmod is the issue.

[slevis-lmwg]

UPDATE

I reverted the order of /testmods in the test like this: SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Bgc.derecho_intel.clm-PRISM--clm-NEON-MOAB and the test passed. I will follow up with a test to confirm that I get same answers relative to the original test:

Running the two tests from ctsm5.2.028, i.e. the last tag when the original test passed: Diffs in the lnd_in files suggest that we may see diffs in answers. The runs fail on izumi because they think that cesm.exe does not exist, which it does. If this problem persists, I will repeat these two tests on derecho.

[slevis-lmwg]

The new test works but gives diff answers in ctsm5.2.028 (last tag when the default test still worked) due to diff lnd_in (new test versus default test)

28,29c28,32
<  hist_fincl2 = 'AR', 'ELAI', 'FCEV', 'FCTR', 'FGEV', 'FIRA', 'FSA', 'FSH', 'GPP', 'H2OSOI', 'HR', 'SNOW_DEPTH',
<          'TBOT', 'TSOI', 'SOILC_vr', 'FV', 'NET_NMIN_vr'
---
>  hist_fincl2 = 'TG', 'TBOT', 'FIRE', 'FIRA', 'FLDS', 'FSDS', 'FSR', 'FSA', 'FGEV', 'FSH', 'FGR',
>          'TSOI', 'ERRSOI', 'SABV', 'SABG', 'FSDSVD', 'FSDSND', 'FSDSVI', 'FSDSNI', 'FSRVD', 'FSRND', 'FSRVI',
>          'FSRNI', 'TSA', 'FCTR', 'FCEV', 'QBOT', 'RH2M', 'H2OSOI', 'H2OSNO', 'SOILLIQ', 'SOILICE', 'TSA_U',
>          'TSA_R', 'TREFMNAV_U', 'TREFMNAV_R', 'TREFMXAV_U', 'TREFMXAV_R', 'TG_U', 'TG_R', 'RH2M_U', 'RH2M_R', 'QRUNOFF_U', 'QRUNOFF_R',
>          'SoilAlpha_U', 'SWup', 'LWup', 'URBAN_AC', 'URBAN_HEAT'
114,115c117,118
<  stream_fldfilename_lightng = '/glade/campaign/cesm/cesmdata/inputdata/atm/datm7/NASA_LIS/clmforc.Li_2016_climo1995-2013.360x720.lnfm_Total_NEONarea_c210625.nc'
<  stream_meshfile_lightng = '/glade/campaign/cesm/cesmdata/inputdata/atm/datm7/NASA_LIS/ESMF_MESH.Li_2016.360x720.NEONarea_cdf5_c221104.nc'
---
>  stream_fldfilename_lightng = '/glade/campaign/cesm/cesmdata/inputdata/atm/datm7/NASA_LIS/clmforc.Li_2016_climo1995-2013.360x720.lnfm_Total_c160825.nc'
>  stream_meshfile_lightng = '/glade/campaign/cesm/cesmdata/inputdata/atm/datm7/NASA_LIS/clmforc.Li_2016_climo1995-2013.360x720_ESMFmesh_cdf5_150621.nc'

Next I want to look at code diffs between ctsm5.2.029 and ctsm5.2.028 in case I spot the root cause of the failure.

[slevis-lmwg]

From the code diffs 029 vs. 028, I see three main areas to focus on:

• /cime_config/usermods_dirs/NEON/defaults/user_nl_clm <-- I HAVE A FEELING THIS IS IT (SEE diff BELOW) and RELATES TO #2752.
• CLMBuildNamelist.pm: search NEON
• namelist_defaults_ctsm.xml: search NEON

--- a/cime_config/usermods_dirs/NEON/defaults/user_nl_clm
+++ b/cime_config/usermods_dirs/NEON/defaults/user_nl_clm
@@ -18,9 +18,6 @@
 ! Set glc_do_dynglacier  with GLC_TWO_WAY_COUPLING               env variable
 !----------------------------------------------------------------------------------

-flanduse_timeseries = ' '   ! This isn't needed for a non transient case, but will be once we start using transient compsets
-fsurdat = "$DIN_LOC_ROOT/lnd/clm2/surfdata_esmf/NEON/surfdata_1x1_NEON_${NEONSITE}_hist_2000_78pfts_c240206.nc"
-
 ! h1 output stream

[slevis-lmwg]

Putting back the code shown in the last post fixes the test failure. But it also reverses an attempt to reduce code clutter. Is there an alternative solution? Is the /testmods order-reversal -- that I showed works -- an acceptable solution?

[samsrabin]

I think the root issue is that the NEON site defaults only apply if simulating 2018:

<!-- for NEON sites present day simulations - year 2000 -->
<fsurdat hgrid="CLM_USRDAT" neon=".true." sim_year="2018" use_fates=".true.">
lnd/clm2/surfdata_esmf/NEON/ctsm5.3.0/16PFT_mixed/surfdata_1x1_NEON_${NEONSITE}_hist_2000_16pfts_c240912.nc</fsurdat>
<fsurdat hgrid="CLM_USRDAT" neon=".true." sim_year="2018" use_fates=".false.">
lnd/clm2/surfdata_esmf/NEON/ctsm5.3.0/surfdata_1x1_NEON_${NEONSITE}_hist_2000_78pfts_c240912.nc</fsurdat>

Is there a reason for that?

[samsrabin]

Or another way of looking at it: The issue is that adding the PRISM testmod after the NEON one means that the NEON testmod's shell_commands seemingly never get run. Otherwise, the date would be set to 2018.

But that raises another question: When you run with PRISM first, does the PRISM testmod's shell_commands get run?

[samsrabin]

Never mind, that's not it. Both orderings result in the following output for ./xmlquery -p YR:

Results in group run_component_datm
    DATM_YR_ALIGN: 2018
    DATM_YR_END: 2020
    DATM_YR_START: 2018
    DATM_YR_START_FILENAME: 9999

And the following for ./xmlquery --listall | grep 2018:

    CLM_NML_USE_CASE: 2018_control
    DATM_YR_ALIGN: 2018
    DATM_YR_START: 2018

But I have to say, I don't like not knowing why the order matters...

[samsrabin]

Found it! The problem is that CLMBuildNamelist.pm doesn't set neon to .true. unless CLM_USRDAT_NAME is NEON. When the PRISM testmod comes second, CLM_USRDAT_NAME is set to NEON.PRISM. The following change fixes it:

--- a/bld/CLMBuildNamelist.pm
+++ b/bld/CLMBuildNamelist.pm
@@ -713,7 +713,7 @@ sub setup_cmdl_resolution {
   $nl_flags->{'neon'} = ".false.";
   $nl_flags->{'neonsite'} = "";
   if ( $nl_flags->{'res'} eq "CLM_USRDAT" ) {
-    if ( $opts->{'clm_usr_name'} eq "NEON" ) {
+    if ( $opts->{'clm_usr_name'} eq "NEON" || $opts->{'clm_usr_name'} eq "NEON.PRISM" ) {
        $nl_flags->{'neon'} = ".true.";
        $nl_flags->{'neonsite'} = $envxml_ref->{'NEONSITE'};
        $log->verbose_message( "This is a NEON site with NEONSITE = " . $nl_flags->{'neonsite'} );

However, there's probably a better way to do this with Perl—e.g., instead of checking for exact matches, just check whether the name starts with NEON.

[samsrabin]

Yep, like so:

--- a/bld/CLMBuildNamelist.pm
+++ b/bld/CLMBuildNamelist.pm
@@ -678,6 +678,11 @@ sub setup_cmdl_chk_res {
   }
 }

+sub begins_with
+{
+    return substr($_[0], 0, length($_[1])) eq $_[1];
+}
+
 sub setup_cmdl_resolution {
   my ($opts, $nl_flags, $definition, $defaults, $envxml_ref) = @_;

@@ -713,7 +718,7 @@ sub setup_cmdl_resolution {
   $nl_flags->{'neon'} = ".false.";
   $nl_flags->{'neonsite'} = "";
   if ( $nl_flags->{'res'} eq "CLM_USRDAT" ) {
-    if ( $opts->{'clm_usr_name'} eq "NEON" ) {
+    if ( begins_with($opts->{'clm_usr_name'}, "NEON") ) {
        $nl_flags->{'neon'} = ".true.";
        $nl_flags->{'neonsite'} = $envxml_ref->{'NEONSITE'};
        $log->verbose_message( "This is a NEON site with NEONSITE = " . $nl_flags->{'neonsite'} );

[slevis-lmwg]

Thank you @samsrabin I'm testing your suggestion now.

[slevis-lmwg]

./create_test SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Bgc.derecho_intel.clm-NEON-MOAB--clm-PRISM worked on derecho, so I will open a PR with your suggested mods.