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Ensembl / ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
https://www.ensembl.org/vep
Apache License 2.0
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incomplete html stats files #1742

Closed zyxNo1 closed 2 months ago

zyxNo1 commented 3 months ago

Describe the issue

I encountered the same issue as described in https://github.com/Ensembl/ensembl-vep/issues/974. The html file description and overview table are fine, yet there are no figures. I initially used version 105 and subsequently updated to the newest one, version 112, but the problem persists.

html_fail

System

Full VEP command line

vep --vcf --force_overwrite --cache  -i ./output_somatic/gatk/snv_gatk.vcf --fork 20 -o ./annot/test_vep --dir_plugins ../download/vep_annot/ --dir_cache ../download/vep_annot/Cache/  --stats_text  --stats_html

Full error message

no error or warning messages

dglemos commented 3 months ago

Hi @zyxNo1, Unfortunately, I cannot reproduce the issue. Can you show the complete html stats file? What does the data look like in the output file? Is there anything missing?

dglemos commented 2 months ago

I'm going to close the issue but feel free to re-open it if the issue persists.

Best wishes, Diana