Ensembl / ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
https://www.ensembl.org/vep
Apache License 2.0
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Add new option to fetch clinvar somatic classification + patch db for 115 #1794

Open dglemos opened 1 week ago

dglemos commented 1 week ago

Ticket: https://www.ebi.ac.uk/panda/jira/browse/ENSVAR-5941 Add option to return new clinvar somatic classification.

To test this code, please point to ensembl-variation update: https://github.com/Ensembl/ensembl-variation/pull/1117

dglemos commented 1 week ago

Tests fail because of missing method get_somatic_clin_impact_by_location. This is part of this PR https://github.com/Ensembl/ensembl-variation/pull/1117