Formatting and others

[luiztauffer]

General improvements on formatting, typing, unused args, logging and docstrings.

Bug fixes:

• [ ] Fix #84
• [ ] Fix #85
• [ ] Fix #87
• [x] Fix #88

[codecov[bot]]

Codecov Report

Attention: Patch coverage is 81.26984% with 177 lines in your changes missing coverage. Please review.

Files with missing lines	Patch %	Lines
src/vame/analysis/community_analysis.py	61.53%	50 Missing :warning:
src/vame/model/rnn_vae.py	77.86%	27 Missing :warning:
src/vame/analysis/pose_segmentation.py	78.57%	18 Missing :warning:
src/vame/model/create_training.py	77.77%	18 Missing :warning:
src/vame/model/evaluate.py	78.75%	17 Missing :warning:
src/vame/util/align_egocentrical.py	66.66%	17 Missing :warning:
src/vame/analysis/videowriter.py	83.07%	11 Missing :warning:
src/vame/analysis/umap.py	87.50%	6 Missing :warning:
src/vame/initialize_project/new.py	87.17%	5 Missing :warning:
src/vame/util/data_manipulation.py	90.00%	4 Missing :warning:
... and 3 more

Files with missing lines	Coverage Δ
src/vame/__init__.py	100.00% <100.00%> (ø)
src/vame/analysis/__init__.py	100.00% <100.00%> (ø)
src/vame/initialize_project/__init__.py	100.00% <ø> (ø)
src/vame/logging/logger.py	94.33% <100.00%> (ø)
src/vame/schemas/project.py	100.00% <100.00%> (ø)
src/vame/schemas/states.py	97.05% <100.00%> (-0.09%)	:arrow_down:
src/vame/util/__init__.py	100.00% <ø> (ø)
src/vame/util/auxiliary.py	72.97% <100.00%> (+0.75%)	:arrow_up:
src/vame/util/model_util.py	97.05% <100.00%> (ø)
src/vame/model/dataloader.py	97.14% <93.75%> (ø)
... and 12 more

... and 1 file with indirect coverage changes