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ExaScience / elprep

elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.
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Issue during build of v5.1.0 #55

Closed matthdsm closed 3 years ago

matthdsm commented 3 years ago

It seems building from source doesn't work: https://app.circleci.com/pipelines/github/bioconda/bioconda-recipes/53687/workflows/40af8e10-1d30-4541-9fba-0b3cc7ab98c3/jobs/170646

13:19:42 BIOCONDA INFO (OUT) go: downloading github.com/exascience/pargo v1.1.0
13:19:42 BIOCONDA INFO (OUT) go: downloading github.com/google/uuid v1.2.0
13:19:42 BIOCONDA INFO (OUT) go: downloading golang.org/x/sys v0.0.0-20210514084401-e8d321eab015
13:19:42 BIOCONDA INFO (OUT) go: downloading github.com/bits-and-blooms/bitset v1.2.0
13:19:44 BIOCONDA INFO (OUT) # github.com/exascience/elprep/v5/sam
13:19:44 BIOCONDA INFO (OUT) sam/split-merge.go:237:21: undefined: MergeInputs
13:19:44 BIOCONDA INFO (OUT) sam/split-merge.go:671:21: undefined: MergeInputs
matthdsm commented 3 years ago

The latest commits fix the build issue. Can you pin a new release or re-pin the latest release? Then I'll update the conda recipe.

Thanks M

caherzee commented 3 years ago

Done. Thanks!

matthdsm commented 3 years ago

Awesome, thank you! You'll see the new version number pop up in the README tags shortly. I had already fixed the current version with a patch too.

M