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ExpressionAnalysis / STAR-SEQR

RNA Fusion Detection and Quantification
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IOERRROR in docker #20

Open medcelerate opened 4 years ago

medcelerate commented 4 years ago

I am running using the latest cwl, however am getting the error below. I tried updating the docker container but this did not make a change.

[48006 rows x 6 columns]]'. Reason: 'IOError('bad message length',)'
JiaShun-Xiao commented 3 years ago

@medcelerate try to use more threads, I fix it by passing '20' to '-t' argument. The reason causes this issue is that results returned from child processes grow too large. If we increase child processes, the returned result will become smaller