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ExpressionAnalysis / STAR-SEQR

RNA Fusion Detection and Quantification
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ERROR - b'\nBAMoutput.cpp:27:BAMoutput: exiting because of *OUTPUT FILE* error: could not create output file #27

Open kate-simonova opened 3 years ago

kate-simonova commented 3 years ago

Running the following command generates an error: starseqr.py -1 26-R-EMEA1-VA_S8_trim_L001_R1_001.fastq.gz -2 26-R-EMEA1-VA_S8_trim_L001_R2_001.fastq.gz -m 0 -p ./ -t 25 -i ./ -g ../genomes/Homo_sapiens/UCSC/hg38/Annotation/Genes/genes.gtf -r ../genomes/Homo_sapiens/UCSC/hg38/Sequence/WholeGenomeFasta/genome.fa

2021-04-18 20:45 - ERROR - b'\nBAMoutput.cpp:27:BAMoutput: exiting because of *OUTPUT FILE* error: could not create output file /home/simonova/fusion_genes_kate_STAR-SEQR/fusion_genes_kate._STARtmp//BAMsort/20/16\nSOLUTION: check that the path exists and you have write permission for this file. Also check ulimit -n and increase it to allow more open files.\n\nApr 18 20:45:20 ...... FATAL ERROR, exiting\n'
2021-04-18 20:45 - ERROR - Error: STAR failed
NoneType: None