Identify proteomics Minimum Information

FAIRplus / FAIRPlus_squad2

an internal issue tracker (=todo list) for Squad team 2

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Identify proteomics Minimum Information #31

Open mcourtot opened 5 years ago

mcourtot commented 5 years ago

Is there an existing MI for proteomics data that we can assess resolute against? Goal is to provide a wish list metadata for upcoming datasets

mcourtot commented 4 years ago

Check ontology recommendation (eg Brenda mentioned by @proccaserra)

proccaserra commented 4 years ago

@sedlyarov @mcourtot @FuqiX https://www.ebi.ac.uk/pride/help/archive/submission/pridexml

Section 6: Recommendations on Ontology Use -> PRIDE requires BRENDA for annotation Source/specimen describe which differs from ArrayExpress or ENA (EFO, free text respectively)

TODO: Documenting Requirements and Use case: Ontology Mapping BRENDA <-> EFO related to:

FuqiX commented 4 years ago

@ulo and @sedlyarov submitted the proteomics dataset to Proteomexchange/PRIDE with right format and annotation. Links will be added later