FCP-INDI C-PAC issues - Githubissues

FCP-INDI / C-PAC

Configurable Pipeline for the Analysis of Connectomes

https://fcp-indi.github.io/

GNU Lesser General Public License v3.0

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issues

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👷⬆️ Upgrade `git-annex-standalone` for smoke tests

#2128 shnizzedy closed 1 day ago
0
only write .json files to .nii.gz image files

#2127 birajstha closed 1 week ago
0
added sub- and ses- in the relative paths

#2126 birajstha closed 1 week ago
0
Added method write_to_disk(path) to the ResourcePool and Resource class.

#2125 birajstha closed 1 week ago
0
Introduced resource object in the rpool.

#2124 birajstha closed 1 week ago
0
⬆️ Bump urllib3 from 1.26.18 to 1.26.19

#2123 dependabot[bot] closed 1 week ago
2
⬆️ Bump scikit-learn from 1.2.2 to 1.5.0 & urllib3 from 1.26.18 to 1.26.19

#2122 dependabot[bot] closed 1 week ago
1
Bids ingress

#2121 birajstha closed 2 weeks ago
0
📦️ Restore `bids-validator` installation in containerized C-PAC images

#2120 shnizzedy closed 3 weeks ago
0
🐛 Make sure `use_ants` is defined before passed as a param

#2119 shnizzedy opened 1 month ago
0
✨ Integrate interface for SynthStrip skull-stripping

#2118 shnizzedy opened 1 month ago
0
🐛 [User-reported Bug] ICA AROMA crashes with 'DataFrame' object has no attribute 'append'. Did you mean: '_append' error

#2117 nimzodisaster closed 1 month ago
1
♻️bids2table library for BIDS utils in CPAC, replacing and abstracting chunky utility functions

#2116 birajstha opened 1 month ago
0
⚰️ Remove stale variants

#2115 shnizzedy closed 1 month ago
0
⬆️ Bump requests from 2.31.0 to 2.32.0

#2114 dependabot[bot] closed 1 month ago
0
🐛 Functional preprocessing only pipeline not working

#2113 dseeburger3 opened 1 month ago
2
🐛 User-provided brain masks are not being read in to the resource list

#2112 nimzodisaster closed 1 month ago
11
📦️ PEP 518: Set `[build-system]` in `pyproject.toml`

#2111 shnizzedy closed 1 month ago
0
🐛 PyPI's `bids_validator` does not include CLI

#2110 shnizzedy closed 3 weeks ago
0
♻️ Always or by default have Function nodes "as module"s?

#2109 shnizzedy opened 1 month ago
0
🎨 This `ts` isn't used anywhere. Do we care to assign it just to annotate, or should we drop this line?

#2108 shnizzedy opened 1 month ago
0
♻️ DRY "Gathering the output file paths from" in `cpac_group_runner`

#2107 shnizzedy opened 1 month ago
0
♻️ DRY `isc.py` and `isfc.py`

#2106 shnizzedy opened 1 month ago
0
♻️ Replace `logger.error; sys.exit` pattern with `raise SpecificException` pattern

#2105 shnizzedy opened 1 month ago
0
🐛 Freesurfer-based pipeline options cause a hang in a specific use case

#2104 sgiavasis opened 1 month ago
0
🐛 [User-reported Bug] Not Reading In Slice Timing json in Bids Dataset

#2103 nimzodisaster opened 2 months ago
0
Update release candidate with recent PR #2101 to `develop`

#2102 sgiavasis closed 2 months ago
0
⏪️ Revert file mode changes from 9e9503d26 & 21911eacf

#2101 shnizzedy closed 2 months ago
0
Release v1.8.7

#2100 sgiavasis closed 2 months ago
1
🚀 Release v1.8.7

#2099 sgiavasis closed 2 months ago
1
🐛 not running multiple subjects simultaneously

#2098 nimzodisaster opened 2 months ago
2
:sparkles: Make fs ingress configurable from commandline

#2097 e-kenneally closed 2 months ago
0
Fix missing resource `space-template_res-bold_desc-brain_T1w`

#2096 birajstha closed 2 months ago
0
✨Allow FS ingress from command line

#2095 e-kenneally closed 2 months ago
0
Remove dead code in timeseries_analysis.py

#2094 ReinderVosDeWael closed 1 month ago
0
Enable smoothing & z-scoring with ingress

#2092 e-kenneally closed 2 months ago
0
⚡️Optimize cosine filter

#2091 birajstha opened 3 months ago
0
🐛 [User-reported Bug] FileNotFoundError for output 'out_file' of a TShift interface

#2090 DongHyoek opened 3 months ago
1
📝 Update XCP-QC docstring

#2089 shnizzedy closed 1 month ago
0
🚨 Lint `CPAC/alff/utils.py` and `CPAC/qc/xcp.py`

#2088 shnizzedy closed 1 month ago
0
🐞 Final bugfixes 1.8.7

#2087 e-kenneally closed 3 months ago
0
✨ [User-requested Feature] Freesurfer-Ingress without data config

#2086 nx10 opened 3 months ago
0
🐛 fmriprep-ingress pipeline nuisance regression

#2085 klemens-egger closed 2 months ago
9
✨ Generalize N4 bias correction option for all coregistration inputs

#2084 sgiavasis opened 3 months ago
0
Upgrade Ruff to 0.3.2

#2083 nx10 closed 3 months ago
0
🐛 `Image Exception : #3 :: Attempted to multiply images/ROIs of different sizes`

#2082 shnizzedy opened 3 months ago
1
⚡️ Throttle `calc_ants_warp`, `cal_DVARS` and all `cosine_filter`s

#2081 shnizzedy closed 3 months ago
1
🐛 For uploading logs, look for S3 encryption setting in pipeline config

#2080 shnizzedy closed 3 months ago
0
🥅 Raise an error instead of returning `None` where a dict is expected

#2079 shnizzedy closed 3 months ago
1
⚰️ Remove dead code (`create_fsl_model`)

#2078 shnizzedy closed 3 months ago
0