issues
search
FINNGEN
/
ETL
second version for the ETL of the detailed longitudinal data to the OMOP-CDM
https://finngen.github.io/ETL/
MIT License
0
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Update observation period calculation to account for events outside of death_fu_age
#200
shanmukhasampath
opened
2 weeks ago
0
add reference values to measurement
#199
javier-gracia-tabuenca-tuni
closed
1 month ago
0
add test-validity as value_as_concept_id
#198
javier-gracia-tabuenca-tuni
opened
1 month ago
0
documentation etl kanta lab
#197
javier-gracia-tabuenca-tuni
opened
1 month ago
0
add hierarchy to visit codes
#196
javier-gracia-tabuenca-tuni
opened
1 month ago
0
update etl visit occurrence to deal with kmak code
#195
shanmukhasampath
opened
1 month ago
0
potential security error
#194
javier-gracia-tabuenca-tuni
opened
2 months ago
3
Visit must have always a source_visist_id
#193
javier-gracia-tabuenca-tuni
opened
2 months ago
1
Update Kanta measurement lab outcomes into value concept id
#192
shanmukhasampath
opened
2 months ago
0
Add endpoints to cdm script for cohort and cohort definition
#191
shanmukhasampath
opened
3 months ago
1
Provider tables fixed
#190
shanmukhasampath
closed
3 months ago
0
Fixed Kanta sql and unit tests as per column name changes
#189
shanmukhasampath
closed
3 months ago
0
166 measurement values from kanta
#188
shanmukhasampath
closed
3 months ago
0
Fixed unit for blood pressure measurements
#187
shanmukhasampath
closed
3 months ago
0
Fixed temporary kanta table as per Sandbox requirements
#186
shanmukhasampath
closed
3 months ago
0
Fixed kanta schema, sql and tests. All tests PASS
#185
shanmukhasampath
closed
3 months ago
0
Update documentation for registries
#184
shanmukhasampath
opened
3 months ago
0
Fixed to process concept_id -1 in the kanta source data
#183
shanmukhasampath
closed
3 months ago
0
Properly working concept ancestry
#182
shanmukhasampath
closed
3 months ago
0
Properly working concept ancestry
#181
shanmukhasampath
closed
3 months ago
0
Fixed birth registry ETL for DF12
#180
shanmukhasampath
closed
4 months ago
0
Fixed birth registry ETL for DF12
#179
shanmukhasampath
closed
2 months ago
0
166 measurement values from kanta
#178
shanmukhasampath
closed
4 months ago
0
160 write etl script to add kidney table to to cdm
#177
shanmukhasampath
closed
4 months ago
0
Working version of Kidney registry
#176
shanmukhasampath
closed
2 months ago
0
Working Kanta regsitry ETL except documentation
#175
shanmukhasampath
closed
2 months ago
0
give devAtlas prevalence codes to veronica
#174
javier-gracia-tabuenca-tuni
closed
4 months ago
1
Multi-thread Achilles git fork for nonstadard person count
#173
shanmukhasampath
closed
4 months ago
0
sql script to append to ancestor table from concept relatioship
#172
javier-gracia-tabuenca-tuni
closed
1 month ago
0
drug_exposure missing the route_concept_id ?
#171
javier-gracia-tabuenca-tuni
opened
7 months ago
3
Multi-thread working Achilles prevalence count SQL and csv files
#170
shanmukhasampath
closed
4 months ago
0
copy endpoints to CDM tables
#169
shanmukhasampath
closed
1 month ago
0
change to finngen/achilles branch in lock file in etl project
#168
javier-gracia-tabuenca-tuni
closed
4 months ago
0
Updated Achilles and added achilles concept count sql
#167
shanmukhasampath
closed
8 months ago
0
Measurement values from kanta
#166
javier-gracia-tabuenca-tuni
closed
1 month ago
0
hierarchy in non standard codes
#165
javier-gracia-tabuenca-tuni
closed
1 month ago
0
DF12
#164
javier-gracia-tabuenca-tuni
closed
10 months ago
0
Drug Exposure table will have both VNR and ATC codes
#163
shanmukhasampath
closed
1 month ago
2
Update birth mother registry ETL for DF12
#162
shanmukhasampath
closed
1 month ago
2
Changes to account for DF12
#161
shanmukhasampath
closed
10 months ago
0
write ETL script to add kidney table to to cdm
#160
shanmukhasampath
closed
1 month ago
0
Add kidney registry
#159
shanmukhasampath
closed
1 month ago
0
update sql tables as per data freeze 12
#158
shanmukhasampath
closed
9 months ago
2
Vision registry successfully added. Corrections in birth registry.
#157
shanmukhasampath
closed
4 months ago
5
write ETL script to add vision table to to cdm
#156
shanmukhasampath
closed
3 months ago
0
Path to GCP key problem in Sandbox
#155
shanmukhasampath
opened
1 year ago
0
Add vision registry
#154
shanmukhasampath
closed
1 month ago
0
Added QC check for duplicate FINNGENIDs for same SOURCE+INDEX
#153
shanmukhasampath
closed
1 year ago
0
add qc_input_data.sql checks there are not FINNGENIDS with the same INDEX
#152
javier-gracia-tabuenca-tuni
closed
1 year ago
1
update docum
#151
javier-gracia-tabuenca-tuni
closed
1 year ago
0
Next