write ETL script to add vision table to to cdm - Githubissues

FINNGEN / ETL

second version for the ETL of the detailed longitudinal data to the OMOP-CDM

https://finngen.github.io/ETL/

MIT License

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write ETL script to add vision table to to cdm #156

Closed shanmukhasampath closed 3 months ago

shanmukhasampath commented 1 year ago

Detailed steps on how to process Vision data

Add non-standard codes for vision registry in Visit and Measurement domains

[x] https://github.com/FinOMOP/FinOMOP_OMOP_vocabulary/issues/34

SQL code to convert source to CDM

[x] ETL - Visit Occurrence
[x] ETL - STEM
[x] ETL - Measurement

Unit tests for ETL

[x] Visit Occurrence
[x] Condition Occurrence
[x] Measurement

Documentation

[x] Vision main page
[x] Vision visit_occurrence
[x] Vision stem
[x] Vision measurement