FZJ-INM1-BDA siibra-python issues

FZJ-INM1-BDA / siibra-python

Software interfaces for interacting with brain atlases - Python client

Apache License 2.0

46 stars 8 forks source link

issues

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Environment variables are not casted to correct type

#597 ch-schiffer closed 1 week ago
0
Default fetch() for probability maps fails

#596 dickscheid closed 2 weeks ago
1
Querying BigBrainIntesityProfiles with locations does not work as the intersection of locations do not return indices

#595 AhmetNSimsek opened 1 month ago
0
refactor: use attributes

#594 xgui3783 opened 1 month ago
3
CI: Mirror workflow is failing

#593 AhmetNSimsek opened 1 month ago
0
Test examples as a part of e2e. Create docs on push/PR to main and on publish

#592 AhmetNSimsek closed 2 months ago
1
Fix boundingbox transformation

#591 dickscheid opened 2 months ago
1
test: fast ci if regular branch, full suite if PR to main

#590 xgui3783 closed 2 months ago
0
fix: memory usage when warming the cache

#589 xgui3783 closed 2 months ago
2
fix: add assertion error message

#588 xgui3783 closed 2 months ago
0
fix: python closure is weird

#587 xgui3783 closed 2 months ago
0
TypeError: RegionalTimeseriesActivity.__init__() got an unexpected keyword argument 'files'

#586 xgui3783 closed 2 months ago
6
Test: add cron job to test tutorials regularly

#585 AhmetNSimsek closed 2 months ago
1
Doc: use book theme for docs and general maint

#584 AhmetNSimsek opened 3 months ago
1
Use precalculated bounding boxes of image-features to speed up image feature query

#583 AhmetNSimsek opened 3 months ago
0
feat: update how related regions are fetched

#582 xgui3783 closed 2 months ago
7
[maint] `Factory.from_json` overwrites `filename` attribute, if exists

#581 xgui3783 opened 3 months ago
0
[schema] inconsistent map type

#580 xgui3783 opened 3 months ago
0
New: experimental module, with draft classes for cortical patch sampling

#579 dickscheid closed 3 months ago
1
use datasets of the spaces if templates don't have any specified

#578 AhmetNSimsek closed 3 months ago
1
fix: pointset intersection with boundingbox fails if no points inside

#577 dickscheid closed 3 months ago
1
fix: allen gene exp query w a list of genes

#576 AhmetNSimsek closed 4 months ago
1
Read freesurfer .annot files as fsaverage mesh labels

#575 AhmetNSimsek closed 2 months ago
0
Fix: fetch specific label from gii labels

#574 AhmetNSimsek closed 4 months ago
2
Documentation for architecture decision records

#573 AhmetNSimsek closed 4 months ago
2
Use `nilearn.resample_to_img` for merging fragments

#572 AhmetNSimsek closed 2 months ago
1
urls -> doi_or_url and returns a list of string

#571 AhmetNSimsek closed 4 months ago
0
Print versions in version validation and fix bug

#570 AhmetNSimsek closed 4 months ago
0
Proper treatment of "hybrid" anatomical anchors

#569 dickscheid opened 4 months ago
0
Reformat `feature.name` and reintorudce `data` and `plot()` for `CompoundFeature`s

#568 AhmetNSimsek closed 2 months ago
5
Exclude background from connected_components

#567 dickscheid closed 4 months ago
2
Add Volume.evaluate_points() and fix voxel access for _points_inside

#566 dickscheid closed 3 months ago
2
fix: volume._pointsinside resample img to template

#565 AhmetNSimsek closed 4 months ago
2
`get_region("6ma")` returns "posterior medial superior frontal gyrus" instead

#564 xgui3783 opened 4 months ago
2
fix: write lock for warmup

#563 xgui3783 closed 4 months ago
2
Maint: `volume.fetch`

#562 AhmetNSimsek closed 4 months ago
1
Introduce merging Neuroglancer fragments

#561 AhmetNSimsek closed 2 months ago
1
During merging of PR #480, some changes on provider submodules were lost

#560 AhmetNSimsek opened 4 months ago
0
feat: add encode URL point

#559 xgui3783 closed 4 months ago
1
Valid behaviors for points with None space

#558 dickscheid opened 4 months ago
2
Mesh fetching fails for some combinations

#557 dickscheid closed 4 months ago
7
Showing live messages to users

#556 AhmetNSimsek opened 4 months ago
0
Removal of EBRAINS access token

#555 romina1601 closed 4 months ago
2
Feat map to zip

#554 AhmetNSimsek opened 5 months ago
0
Experimental: feature refactor using attributes

#553 xgui3783 closed 1 month ago
4
`Feature.export` should be renamed to `Feature.to_zip`

#552 xgui3783 closed 5 months ago
2
Neuroglancer fragments cannot be merged

#551 AhmetNSimsek closed 2 months ago
1
Use codecov v3

#550 AhmetNSimsek closed 5 months ago
0
Neuroglancer volume fetching

#549 AhmetNSimsek closed 5 months ago
1
fix: cancel previous workflows

#548 xgui3783 closed 5 months ago
1