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FoxoTech
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methylprep
Python-based preprocessing software for Illumina methylation arrays
MIT License
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v1.1 release
#23
Closed
marcmaxson
closed
5 years ago
marcmaxson
commented
5 years ago
adds a GEO/ArrayExpress dataset download/ingestor to CLI
adds progress bar
also generates a dataframe object of the meta data for downloaded samples
adds
batch_size
option, for processing large datasets in smaller batches. This is off by default, but useful when doing 100+ samples at a time.
when
run_pipeline
is used in python interpreter, nothing is returned if >200 samples now.
improved test coverage
batch_sizeoption, for processing large datasets in smaller batches. This is off by default, but useful when doing 100+ samples at a time.run_pipelineis used in python interpreter, nothing is returned if >200 samples now.