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FredHutch / VISCtemplates

Tools for writing reproducible reports at VISC
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ADCC combined GTL and luciferase template #220

Closed lemireg closed 1 month ago

lemireg commented 1 month ago

Update to incorporate most recent ADCC template code aligning with HVTN per: T:\vaccine\documents\templates\lab_assay_memos\ADCC-Flow_Memo_PT_Template_LS.docx T:\vaccine\documents\templates\lab_assay_memos\ADCC-Luc_Memo_PT_Template_2022-12-21.docx

These files reflects the above HVTN templates (and additional feedback Shannon had with lab in using % specific killing instead of % loss luciferase): inst/templates/methods-adcc/adcc-lab-methods.Rmd inst/templates/methods-adcc/adcc-biological-endpoints.Rmd inst/templates/methods-adcc/adcc-statistical-methods.Rmd inst/templates/bibliography.bib

Other files are modified to allow loading in of report_type = "adcc": R/use_visc_report.R man/use_visc_methods.Rd man/use_visc_report.Rd

I have loaded in this branch, generated the report with use_visc_report(report_type = "adcc") and knit the file and it knits as expected. See attached PDF. TEST_adcc.pdf

lemireg commented 1 month ago

Note this should be merged into develop so it is actually a continuation of the current PR open. I added my comment there and tagged additional folks and closed this PR.