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Fudenberg-Research-Group
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fastaFRiP
pipeline for calculating FRiP from fasta (or bed + fasta)
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#30
Yaoyx
opened
1 month ago
1
Check ReadMe
#29
Yaoyx
closed
3 months ago
2
suggestion for merging config files
#28
hrahmanin
opened
4 months ago
0
Update README.md
#27
hrahmanin
closed
4 months ago
0
fix bool
#26
Yaoyx
closed
4 months ago
0
1.Add some explanations to config files 2. Add an option for automat…
#25
Yaoyx
closed
4 months ago
0
remove log from readme, and remove dataset parameter from create_frip…
#24
Yaoyx
closed
4 months ago
0
Further automate the process of generating table
#23
Yaoyx
closed
4 months ago
0
clean repo
#22
Yaoyx
closed
4 months ago
0
update create_frip_table
#21
Yaoyx
closed
4 months ago
0
update fetch_metadata parameters
#20
Yaoyx
closed
5 months ago
0
Hadirah87 patch 1
#19
hrahmanin
opened
5 months ago
0
Yao
#18
Yaoyx
closed
5 months ago
0
if input file is provided in metadata, calling peaks will based on in…
#17
Yaoyx
closed
7 months ago
0
fix the issue of wrong wildcards
#16
Yaoyx
closed
8 months ago
0
update readme for metadata table
#15
Yaoyx
closed
8 months ago
0
use metadata table for control and chip samples
#14
Yaoyx
closed
8 months ago
0
fix the same path for control and chip
#13
Yaoyx
closed
8 months ago
0
create output directory automatically, and update ReadME tips
#12
Yaoyx
closed
8 months ago
0
fix wildcards problem in bam_to_bed
#11
Yaoyx
closed
8 months ago
0
1.fix the bug of using bam file without remoing duplicates in non-spi…
#10
Yaoyx
closed
8 months ago
0
update calculate_frip.py to use metadata table
#9
Yaoyx
closed
8 months ago
0
update readme cd fastaFRiP/frip_sm
#8
Yaoyx
closed
8 months ago
0
set index_primary and index_spikein to different name when spikein co…
#7
Yaoyx
closed
8 months ago
0
merge bam_to_bed into the pipeline
#6
Yaoyx
closed
8 months ago
0
Bam to bed
#5
smitkadvani
closed
4 months ago
0
Update the procedure for fastq to bam with scaling
#4
Yaoyx
closed
10 months ago
1
macs2 with default config added
#3
smitkadvani
closed
4 months ago
1
adding requirements
#2
hrahmanin
closed
4 months ago
1
made a snake script for generating bam files
#1
Yaoyx
closed
1 year ago
0