Check ReadMe

[gfudenberg]

in the Descriptions section: https://github.com/Fudenberg-Research-Group/fastaFRiP/blob/6e1733e86d2bcc245917ea95631a5f9061185a3a/README.md?plain=1#L4 we shoudl mention tools used in the pipeline & links to their repositories, e.g.

• bowtie2 for mapping reads (https://github.com/BenLangmead/bowtie2)
• MACS2 for calling peaks
• deeptools for counting reads in peaks

can mention that the pipeline supports ChIP-seq datasets with or without spike-in

[gfudenberg]

• for #prerequisites section, is there a preferred way for installing the Snakemake

• lets move mm10-blacklist.v2.fixed.bed to a data folder