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GGFHF / TOA

TOA (Taxonomy-oriented Annotation) establishes workflows geared towards plant species that automate the extraction of information from genomic databases and the annotation of sequences.
GNU General Public License v3.0
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Execute option does not appear #4

Open aman-akash opened 2 years ago

aman-akash commented 2 years ago

Hey, I am trying to annotate a plant genome and I am following the manual for installation of TOA. i am using a conda enviornment on linux and I am able to execute the program and build the config file. However, I can not find the execute for installing Miniconda channel and bioinfo tools from the configuration option. It just shows a blank window when I open the mentioned option in Bioinfo software installation. Is there any fix or workaround for the same?

fernandomoramarquez commented 2 years ago

Hi Aman. First, thanks for using TOA and your input. I understand that your problem is that in the screen that appears from the menu item "Configuration > Bioinfo software installation > Miniconda 3 (Conda infrastructure)" does not contain "Execute" and "Cancel" buttons, isn't it? Have you tried maximizing the window to see if the buttons appear? What is your operating system and its version? What is your screen resolution? Best regards,

aman-akash commented 2 years ago

Hey, Yes the problem is the same as you mentioned. Under configuration menu including Miniconda, Blast, Diamond and other softwares, the execute and cancel buttons are not visible or simply not present. There is no maximize button as such. I tried maximizing the program using command line which also did not work. I tried with two operating systems being Ubuntu 20 and openSUSE. I had the same problem in both the operating systems. The screen resolutions were also different. I tried on 1920x1080 and 1600x1200. Is there any way to use the software using command line as well or we have to use the GUI?

fernandomoramarquez commented 2 years ago

Hello Aman.

TOA can also be used without GUI from a console by running the command "TOA.py --mode=console" (if TOA.py has execute permission) or "python3 TOA.py --mode=console" (otherwise).

When you select the menu item "Configuration > Bioinfo software installation > Miniconda 3 (Conda infrastructure)", no warning or error appears in the console, right?

What is your Python 3 version? (command "python3 --version")

Can you please run the following test? Run python3 (command "python3") and once inside, type the following instructions:

import tkinter as tk import tkinter.ttk as ttk root = tk.Tk() root.config(width=300, height=200) root.title('ttk.button test') button = ttk.Button(text='Hello,world!') button.place(x=50, y=50) root.mainloop()

Is the "Hello,world!" button displayed in the window?

Best regards,