Adds xnat integration - Githubissues

GSTT-CSC / MLOps

Framework for building ML apps

GNU General Public License v3.0

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Introduces integration with XNAT archive through a MONAI transform. See README additions for full description of this feature.

Tests have been written for the XNAT features, although they pass locally I've not been able to get the tests to pass on github actions. This is because I can't open a connection with the xnat hosted inside the container. Since we need this feature ASAP I have marked the tests to skip for now but once this PR is merged I will create an issue to remind us to fix the test.

File	Stmts	Miss	Cover	Missing
mlops
Experiment.py	126	15	88%	26, 46, 48, 53, 76–77, 113, 134, 163–166, 170–171, 178–179
ProjectFile.py	27	1	96%	25
mlops/data/tools
tools.py	16	14	12%	26–48
mlops/data/transforms
LoadImageXNATd.py	34	25	26%	18–22, 25–61
TOTAL	221	55	75%

File

Stmts

Miss

Cover

Missing

mlops

Experiment.py

126

88%

26, 46, 48, 53, 76–77, 113, 134, 163–166, 170–171, 178–179

ProjectFile.py

96%