Closed earn97 closed 2 years ago
Hi.
This file is for SNV co-expression analysis. That file provides data on how many collapsed reads support two different SNVs.. The RR, AA, RA, AR columns are the molecule counts for reads supporting the RR (ref/ref), AA (alt/alt), etc. genotypes.
The file you would want for your analyses would be use the annotate command. This would give you files with all of the SNV calling information you would like.
Hi. I have some question about the output file.
I got final output file (snv_barcode_bases.txt.gz, snv_base_counts.txt.gz, snv_edges.txt.gz, snv_map.txt.gz, snv_reads.txt.gz). I need the point mutation's ref, alt so I want to use snv_edges.txt.gz file.
But I can't understand all columns, especially why pos_1, pos_2 is together in same row and they are appears repeatedly. Also i want to know the meaning of RR,AA,RA,AR columns.
Please explain about the output file's columns in detail.