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Gaius-Augustus
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learnMSA
Learning and Aligning Large Protein Families with support of protein language models.
MIT License
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Is the MSA (Multiple Sequence Alignment) generated by learnMSA2 suitable for phylogenetic analysis?
#16
permia
opened
4 days ago
3
An option for keeping the header of each sequence in the aligned fasta.
#15
permia
closed
4 days ago
1
What's the format of the output MSA, fasta, a3m or a2m?
#14
permia
closed
4 days ago
7
TypeError: Exception encountered when calling MsaHmmLayer.call().
#13
hspfatemeh
opened
2 weeks ago
2
Parallel branch - Conda package tiberius
#12
rlibouba
closed
2 weeks ago
3
pytorch dependency is missing when running with pLM
#11
felbecker
closed
1 week ago
1
Unsensical output when aligning very similar sequences with LLM support
#10
felbecker
closed
1 week ago
1
Improve runtime for long proteins
#9
felbecker
opened
4 months ago
0
Automatically remove stop codon indicators
#8
felbecker
opened
4 months ago
0
Merge language model and other improvements
#7
felbecker
closed
1 year ago
0
Multi-GPU strategy gives error
#6
felbecker
closed
1 year ago
1
Numerically instable training with tensorflow >= 2.10.0 in CPU mode
#5
felbecker
closed
1 year ago
3
It seems like no GPU is installed. Running on CPU instead.
#4
No-drama-llama
closed
4 months ago
10
Can you please assist in resolving this issue? I am not sure if the error is due to my environment, the Python version, or the learnMSA package itself. I am using Python 3.7.12, which should support this syntax. I have also checked my Python environment and tried to recreate it, but the problem persists. I have attached the full traceback below for your reference.
#3
Frankewu0
closed
1 year ago
1
Merge tf 2.12 hotfix
#2
felbecker
closed
1 year ago
0
install with tensorflow 2.12 instead of tensorflow-gpu
#1
rshiroko
closed
1 year ago
5