What is the status of GENEPIO:0002094, specimen (sample?) collection device

[turbomam]

http://purl.obolibrary.org/obo/GENEPIO_0002094 is still mentioned in MIxS's notes about theirsamp_collec_device term

But that ID doesn't resolve in OntoBee anymore:

http://www.ontobee.org/ontology/GENEPIO?iri=http://purl.obolibrary.org/obo/GENEPIO_0002094

Although it does resolve in OLS

https://www.ebi.ac.uk/ols/ontologies/genepio/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FGENEPIO_0002094

[ddooley]

The reason it doesn't resolve in ONTOBEE is that ontobee has failed to load GenEpiO at moment (see http://www.ontobee.org/ontology/GENEPIO). They've been having some problems loading ontologies or their import files. I asked them to look into it yesterday!

[turbomam]

Thanks. So you consider GENEPIO:0002094 a live, stable term?

What is its preferred label now?

[ddooley]

Ah yes, in GenEpiO it is called "specimen collection device": def "The tool or device used to extract a specimen". Now the catch is that this was a term we though OBI might like, and it did so in the last year OBI: http://purl.obolibrary.org/obo/OBI_0002814 "specimen collection device" has been added, defn: "A container used to collect a specimen." And we would ourselves switch to that. Should we coordinate that with you / GSC?

Thanks for bringing this up.

[cmrn-rhi]

Related issue: https://github.com/obi-ontology/obi/issues/1194

[ddooley]

@turbomam - Mark, can we have MIxS switch to specimen collection device?

[ddooley]

@turboman GenEpiO term is deprecated in favour of OBI one. I'm closing this now, but I am curious if MIxS switch to the OBI term?