Skipping parents/sibling phenotypes

GeneDx / txt2hpo

Python library for extracting HPO encoded phenotypes from text

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Skipping parents/sibling phenotypes #52

Open mcgeestephen opened 3 years ago

mcgeestephen commented 3 years ago

A male patient with the following phrase - “mother was treated for trichomonas vaginitis during pregnancy” returns HP:0030683 for "Vaginitis". Can we adapt txt2hpo to identify/remove phenotypes from parents and siblings?

Vincent-Ustach commented 3 years ago

"pregnancy complicated by [redacted] thought to be due to a history of severe alcoholism and anorexia" returns 'HP:0030955' aka "Alcoholism"