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GenomicsAotearoa / metagenomics_summer_school

Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
https://genomicsaotearoa.github.io/metagenomics_summer_school/
GNU General Public License v3.0
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Viral taxonomy tax_predict file missing #70

Closed mlhoggard closed 3 months ago

mlhoggard commented 3 months ago

In viral taxonomy prediction section, we've provided the vConTACT2 output files rather than getting them to run it. But the file vConTACT2_Results/tax_predict_table.tsv (the output from tax_predict_vConTACT2_0.9.19.py) is missing.

Section: https://genomicsaotearoa.github.io/metagenomics_summer_school/day3/ex10.2_viruses/#introduction-to-vcontact2-for-predicting-taxonomy-of-viral-contigs

JSBoey commented 3 months ago