isotope exposure

[mslarae13]

New term details For us to assess a new term request we require the following details:

Term name - isotope exposure
Structured comment name - [a less than 20char no spaces version of the name] isotope_exposure
Definition - [a clear and concise description of the term including ] Detail if your sample received any kind of isotope exposure, how much, what exposure, and if it was repeated exposure
Expected value - [e.g. text or EFO and/or OBI etc...] text
Value syntax - [e.g. {float} {unit}|{termLabel} {[termID]}|{text}|{timestamp} etc...] {value}{unit}{regimen?}
Example - [provide and example value] 13C glucose, 200µg of C at start of incubation or 200µg of 13C; glucose; 2021-01-01T1200, 2021-01-01T1500
Preferred unit - [if appropriate]
Package(s) - [list any packages that should include the new term] all

Additional context Add any other context about the new term here.

Isotope exposure can be an important data search factor to include or exclude. this provides a way to standardize that and make it directly identified

[mslarae13]

See isotope & isotopologue & isotopolog_dose & isotopolog_incu_time https://github.com/GenomicsStandardsConsortium/mixs/issues/576 https://github.com/GenomicsStandardsConsortium/mixs/issues/586 https://github.com/GenomicsStandardsConsortium/mixs/issues/577 https://github.com/GenomicsStandardsConsortium/mixs/issues/588

These terms are proposed at the checklist level. Is it acceptable with GSC standards to use a checklist term in an extension? If so, isotope_exposure is not needed and the above 4 terms will satisfy

[mslarae13]

this term should not be added as it's satisfied by the 4 separate terms being added for SIP checklist.

[mslarae13]

Leaving open as a place to discuss how to collected 'slots in a slot' complex terms.

Examples

Agro_chem_addition= {“chemical”: “raw sulfur”, “concentration”: “1 kg/acre”, “start_date”: “2023-01-15”} Suggested

isotope_exposure= isotope: 13C, isotopologue: glucose, dose: 200µg of C, duration: full incubation | isotope: 13C, isotopologue: glucose, dose: 200µg of 13C, start: 2021-01-01T1200, stop: 2021-01-01T1500

Could researchers do this? Is it too complex? Are complex slots better captured as single columns (less terms / columns) or individual columns (less complex)?