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GreenleafLab / ArchR

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
MIT License
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Is there an easy way to directly generate a plotPeak2GeneHeatmap by plotting the filtered Peak2GeneLinks after using addPeak2GeneLinks? #2185

Open nh-codem opened 4 months ago

nh-codem commented 4 months ago

Is there an easy way to directly generate a plotPeak2GeneHeatmap by plotting the filtered Peak2GeneLinks after using addPeak2GeneLinks ?

rcorces commented 4 months ago

Hi @Nh-code! Thanks for using ArchR! Lately, it has been very challenging for me to keep up with maintenance of this package and all of my other responsibilities as a PI. I have not been responding to issue posts and I have not been pushing updates to the software. We are actively searching to hire a computational biologist to continue to develop and maintain ArchR and related tools. If you know someone who might be a good fit, please let us know! In the meantime, your issue will likely go without a reply. Most issues with ArchR right not relate to compatibility. Try reverting to R 4.1 and Bioconductor 3.15. Newer versions of Seurat and Matrix also are causing issues. Sorry for not being able to provide active support for this package at this time.