GreenleafLab ArchR issues

GreenleafLab / ArchR

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

MIT License

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issues

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Sudden Error in DoubletScoring; worked perfectly fine previously

#2159 shamer3 opened 6 months ago
3
ERROR Found in .addGeneScoreMat TmpGS for PBMC

#2158 zcaiwei opened 6 months ago
2
Easy bug fix for addClusters to support Leiden igraph implementation

#2155 AmosFong1 opened 7 months ago
1
SummarizedExperiment Error with import10xFeatureMatrix function

#2152 yojetsharma opened 7 months ago
2
Error in plotPDF()

#2150 sokratiag closed 7 months ago
3
Creating ARROW files :ERROR Found in .fastTSSCounts for (Mock1 : 1 of 1)

#2149 YaoyJiang opened 7 months ago
2
Error in plotFootprints(seFoot = seFoot, ArchRProj = projHeme, normMethod = "Subtract", : unused argument (useNames = TRUE)

#2148 ttchen0714 opened 7 months ago
1
installing ArchR on conda

#2146 Mashazhefer opened 7 months ago
2
addGroupCoverages error

#2144 pennycuda closed 7 months ago
2
Paired Multiome samples

#2142 icenzano opened 8 months ago
1
peakAnnoEnrichment fxn gives error "CRsparse_colSums" not resolved from current namespace (Matrix)

#2140 BartBryant opened 8 months ago
8
addGeneExpressionMatrix incorrectly calculates "Gex_MitoRatio"

#2139 dannyconrad opened 8 months ago
1
Unconstrained integration error - "more elements supplied than there are to replace"

#2136 LacquerHed opened 8 months ago
19
Error in plotTrajectoryHeatmap that set labelMarkers failed

#2133 xiaochanmin opened 8 months ago
1
Error in subsetArchRProject

#2132 jinbufan opened 8 months ago
2
GGplot Errors for Fragment Size Distribution and DoubletScores

#2130 shamer3 opened 8 months ago
9
ERROR Found in .fastTSSCounts for creating arrowfile

#2127 macrophage666 opened 8 months ago
6
Error: addDoubletScores about ggplot2

#2123 yuyuyuto001 closed 8 months ago
3
Update auto-comment.yml

#2122 rcorces closed 9 months ago
0
Continuing through after error ggplot for Fragment Size Distribution

#2121 hira-anis opened 9 months ago
6
Is scaleDims scaling along the wrong axis?

#2120 dannyconrad opened 9 months ago
4
addGroupCoverage kills the session

#2117 Aya-Balbaa opened 9 months ago
1
issue with integrating scRNAseq with ArchR using 'addGeneIntegrationMatrix( )

#2115 BartBryant opened 9 months ago
3
Error: invalid subscript in addGeneExpressionMatrix()

#2114 YesseniaCQ opened 9 months ago
1
getFootprints

#2113 uhnxuxi opened 9 months ago
2
Different result in motif deviation score

#2104 zhenglab2023 closed 10 months ago
1
Error splitting archr project

#2103 drighelli opened 10 months ago
1
Error with addIterativeLSI

#2098 eelishh opened 10 months ago
1
ERROR:Found in .fastTSSCounts for/ERROR:ArrowFiles completed./ERROR:double free or corruption

#2097 HaixJiang opened 10 months ago
3
Rstudio crashing with addGeneIntegrationMatrix() and addToArrow = TRUE when accessing GeneIntegrationMatrix from temp files

#2096 dgagler opened 10 months ago
1
addGeneIntegrationMatrix "Error in slot(object = object, name = \"features\")[[layer]] <- features : more elements supplied than there are to replace"

#2091 yushuhuan closed 10 months ago
4
addGeneIntegrationMatrix reductions parameter

#2089 Goultard59 opened 10 months ago
1
Unable to run getMarkerFeatures()

#2088 vincycheng opened 10 months ago
1
Will the arrow files being subset running subsetArchRProject() with dropCells = TRUE?

#2087 qdong2023 opened 11 months ago
1
Error in h5read(x, paste0(useMatrix, "/Info/Units")) : Object 'GeneExpressionMatrix/Info/Units' does not exist in this HDF5 file

#2086 qdong2023 opened 11 months ago
1
Merging or Combining multiple ArchRProject Objects

#2085 qdong2023 opened 11 months ago
1
How to conduct footprint analysis for loci of a single gene across different celltypes

#2084 OMIC-coding opened 11 months ago
1
Error in plotEnrichHeatmap:

#2083 erlun1 opened 11 months ago
1
[error] addDoubletScores function: "addIterativeLSI" - tutorial data

#2082 jinhys opened 11 months ago
4
mapLabels function

#2081 A-legac45 opened 11 months ago
1
Error in import10xFeatureMatrix(input = c("/Volumes/BKUP2/rheMac10_LBN/628/outs/filtered_feature_bc_matrix.h5", :

#2079 sylestiel closed 11 months ago
3
Can not install ArchR by downloading zip from github under conda environment

#2078 Qiuyanhe opened 11 months ago
1
Error when running addIterativeLSI

#2075 QianhuiXu opened 11 months ago
1
change use.names to False in addPeakAnnotations

#2074 igunduz closed 11 months ago
0
A spelling error in Manual.

#2073 jiangpuxuan opened 11 months ago
2
ArchRProject

#2070 TingTingShao opened 11 months ago
1
error of addGeneIntegrationMatrix : <simpleError in dimnames(x) <- dn: length of 'dimnames' [1] not equal to array extent>

#2069 XiaoKaixuan12333 opened 11 months ago
5
Error Report - an errorcreateArrowFiles has encountered an error

#2065 wbszhu closed 12 months ago
3
Installing the package

#2064 jeromejh opened 12 months ago
2
Error addGeneIntegrationMatrix "Error in .getPartialMatrix(getArrowFiles(subProj)"

#2063 ZayaAyush opened 12 months ago
1

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