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GreenleafLab
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ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
MIT License
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The `size` parameter in `plotEmbedding()` cannot work.
#1841
jiangpuxuan
closed
1 year ago
2
Cannot install ArchR
#1837
jeromejh
closed
1 year ago
4
Filtered barcode /cell list
#1834
Guliariel
closed
1 year ago
2
How to subset subtypes?
#1833
dongdongdamowang
closed
1 year ago
3
predictionCutoff parameter in addPeak2GeneLinks
#1832
rcorces
opened
1 year ago
1
Hi, I am geeting this error message (Error in (function (cond) : error in evaluating the argument 'x' in selecting a method for function 'ncol': subscript out of bounds) when I tried to addMotifAnnotations to my archR object. It is owrking perfectly when I tried a different motifSet, Homer, for instance. Many Thanks, Jesus
#1831
JesusCorria
closed
1 year ago
6
Vierstra motif annotation don't match the data on Vierstra website
#1829
NoemieL
closed
1 year ago
4
<simpleError in validObject(r): invalid class “dgTMatrix” object: 'i' and 'j' slots do not have equal length>
#1825
yangqianq
closed
1 year ago
2
error of loadArchRProject
#1822
sunnyyakima
closed
1 year ago
3
plotEmbedding error for nFrags or TSSEnrichment
#1821
ronghai-li
closed
1 year ago
3
Issue with creating ArrrowFile
#1819
millerkaplanlab
closed
1 year ago
6
suffering abrupt termination when reading TabixFile in createArrowFiles step
#1818
cynthier
closed
1 year ago
2
Error with Arrow file when reopening project
#1817
millerkaplanlab
closed
1 year ago
1
Hi,guys! I find a new problem!
#1811
dongdongdamowang
closed
1 year ago
3
Dev desc
#1809
rcorces
closed
1 year ago
0
I want to get TSS site possion of gene,what can i do
#1807
Canda666
closed
1 year ago
1
CRsparse_rowSums" not resolved from current namespace (Matrix)
#1804
dongdongdamowang
closed
1 year ago
4
ShinyArchR_testPull
#1799
rcorces
opened
1 year ago
0
set bcPass as a character vector
#1795
rcorces
closed
1 year ago
0
add ability to save gene score regions
#1794
rcorces
closed
1 year ago
0
Compatibility with Matrix 1.5 - as(<lgCMatrix>, "dgCMatrix") is deprecated since Matrix 1.5-0
#1793
rcorces
closed
1 year ago
2
Update BulkProjection.R
#1791
jacob-greene
closed
1 year ago
12
Error with addTrajectory
#1788
Ping-lin14
closed
1 year ago
6
plotEmbedding Error
#1782
millerkaplanlab
closed
1 year ago
3
Black mask in plotEnrichHeatmap when `transpose = F`
#1780
Zepeng-Mu
closed
1 year ago
6
Error with addCombinedDims function: Error in f(init, x[[i]]) : number of rows of matrices must match (see arg 2)
#1779
millerkaplanlab
closed
1 year ago
5
GeneScoreMatrix Issue after subsetting ArchR project
#1777
katimbach
closed
1 year ago
4
Dev suppress warnings
#1776
rcorces
closed
1 year ago
0
Problem with plotEmbedding -- score/expression visualization for multiome data
#1775
colquittlab
closed
1 year ago
2
Error in getEmbedding(ArchRProj, embedding = embedding, returnDF = TRUE)
#1773
zhangdudu0
closed
1 year ago
1
Cannot reproduce tutorial
#1772
GabyBG
closed
1 year ago
2
Integration with scRNA
#1771
AntoniaChroni
closed
1 year ago
2
Cairo check shows Cairo is not functional
#1770
AntoniaChroni
closed
1 year ago
4
P2G error with addPermutedPval
#1768
AnjaliC4
opened
1 year ago
19
addMotifAnnotations() error with JASPAR
#1766
maggiebr0wn
closed
1 year ago
3
fix window title for ArchRBrowser
#1762
rcorces
closed
1 year ago
0
difference in Peak heights visualization in browser for same gene on plotting !
#1752
ankushs0128
closed
2 years ago
2
addTileMatrix error
#1751
yangxueqianR
closed
2 years ago
3
dev branches can not download
#1750
yangxueqianR
closed
2 years ago
3
fix bug in blacklist
#1745
rcorces
closed
2 years ago
0
Unexpected behavior of addGroupCoverages
#1742
GrafZahl1234
closed
2 years ago
2
Incorrect blacklist overlap calculations in TileMatrix
#1741
bnprks
closed
2 years ago
4
Add CCA batch correction method
#1737
jblich870
opened
2 years ago
1
Plot embedding shows weird stripe pattern
#1731
Ping-lin14
closed
2 years ago
26
Dev trajectory heatmap
#1730
rcorces
closed
2 years ago
0
Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : unable to start device 'png'
#1725
TauHHCC
closed
2 years ago
4
import10xFeatureMatrix
#1724
HieuNg1598
closed
2 years ago
12
Dev track install
#1723
rcorces
closed
2 years ago
0
To integrate skin scRNA and scATAC data in ArchR
#1722
ZayaAyush
closed
2 years ago
1
add define for ARMA_64BIT_WORD
#1721
rcorces
closed
2 years ago
0
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