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GreenleafLab
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ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
MIT License
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No peaks found for getMarkerFeatures
#1715
jamrute
closed
2 years ago
2
Making doubScores and ArchRProject are same issue with outputDirectory cannot have a space in the full path
#1713
ZayaAyush
closed
2 years ago
2
species of "addMotifAnnotations"
#1710
chen-zhan
closed
2 years ago
2
plotPeak2GeneHeatmap error
#1700
wangmhan
closed
2 years ago
3
addIterativeLSI Error in .availiableSeqnames(ArrowFiles, subGroup=useMatrix)
#1692
boconnell89
closed
2 years ago
3
installation of ArchR issues
#1691
lwh2dna
closed
2 years ago
5
add ability to get negative correlations
#1688
rcorces
closed
2 years ago
0
Change Sample for addReproduciblePeakSet
#1682
rhart604
closed
2 years ago
2
createArrow error
#1679
Fuyt27
closed
2 years ago
1
HDF5 error
#1677
AnjaliC4
closed
1 year ago
16
addReproduciblePeakSet error
#1674
chen-zhan
closed
2 years ago
5
Dev trajectory
#1673
rcorces
closed
2 years ago
0
Update ArrowUtils.R
#1672
Goultard59
closed
2 years ago
1
Dev module score
#1666
rcorces
closed
2 years ago
1
Harmony installation has changed
#1665
rcorces
closed
1 year ago
2
Install Harmony Error
#1664
JING202
closed
2 years ago
3
ERROR in Computing Doublet Statistics
#1659
ZunpengLiu
closed
2 years ago
2
Dev metadata
#1655
rcorces
closed
2 years ago
0
Specification of S4vectors::metadata in IterativeLSI.R and MatrixDeviations.R
#1652
ChrisTzaferis
closed
2 years ago
6
ArchR returning empty character(0) for ArrowFiles
#1648
yojetsharma
closed
2 years ago
3
`getTestProject`: Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘replaceCOLS’ for signature ‘"DataFrame"’
#1643
bschilder
opened
2 years ago
21
Update AnnotationPeaks.R
#1638
Goultard59
closed
2 years ago
0
differentially expressed genes
#1632
feanaros
closed
2 years ago
2
AddModuleScore with Peaks
#1631
waltno
closed
2 years ago
26
getMarkerFeatures() Error in nabor::knn(data = data, query = query, k = k, ...) : Cloud has no points
#1630
matteozoia4
closed
2 years ago
7
Issue with installing ArchR
#1625
jblich870
closed
2 years ago
3
Installing monocle3 for ArchR
#1623
dimurali93
closed
2 years ago
2
addTileMatrix Error when input fragments.tsv.gz
#1620
Ruthwww
closed
2 years ago
6
Manual seqlevels not working
#1616
Goultard59
closed
2 years ago
8
Update CreateArrow.R
#1615
Goultard59
closed
2 years ago
1
I encontered the exact same error with `addDoubletScores`, here is my command and errors:
#1609
kstriedinger
closed
2 years ago
4
arrow files I created can't be analyzed downstream -multiple errors
#1606
kstriedinger
closed
2 years ago
6
ERROR Found in .addGeneScoreMat TmpGS
#1604
mumu8910
closed
2 years ago
7
Viewport not found for plotEnrichHeatmap result
#1601
chuyaowang
closed
2 years ago
10
doubScores <- addDoubletScores()
#1599
alifarhat40
closed
2 years ago
4
Variables in createArrowFiles (and other functions) e.g. minTSS not being used
#1598
mfrenkel16
closed
2 years ago
2
createArrowFiles failed to load fragment files
#1595
BokaiZhu
closed
2 years ago
3
Dev gene mismatch
#1594
rcorces
closed
2 years ago
0
weird plot using plotbrowsertrack
#1593
yamihn
closed
2 years ago
4
addDoubletsScores : Error in H5Fopen(file, flags = flags, fapl = fapl, native = native) : HDF5. File accessibility. Unable to open file.
#1581
matteozoia4
closed
2 years ago
3
Error in addPeak2GeneLinks with GeneExpressionMatrix
#1580
fe4960
closed
2 years ago
2
Dev mrc
#1573
rcorces
closed
2 years ago
0
How to create arrow files for 10x output?
#1572
yojetsharma
closed
2 years ago
2
Is addBgdPeaks switching chromosome order in rowRanges object?
#1571
ljcousse
closed
2 years ago
7
Dev leidenalg
#1570
rcorces
closed
2 years ago
0
Cannot pass "igraph" method to Seurat::FindClusters in addClusters
#1567
tiffanyformosa
closed
2 years ago
4
plotbrowsertrack error when setting the features
#1566
yamihn
closed
2 years ago
2
Unable to install ArchR on my linux lab server
#1561
alifarhat40
closed
2 years ago
2
Errore in .getCoverageMetadata(ArchRProj = ArchRProj, groupBy = groupBy, : No Coverage Metadata found for : predictedGroup. Please run addGroupCoverages!
#1557
yamihn
closed
2 years ago
2
Dev max cells
#1556
rcorces
closed
2 years ago
0
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