GuyTeichman
commented
10 months ago Hi, please try running this again using the latest version of RNAlysis (V3.11.0) and let me know if it works.
Best, Guy.
Closed Mitchzw closed 5 months ago
GuyTeichman
commented
10 months ago Hi, please try running this again using the latest version of RNAlysis (V3.11.0) and let me know if it works.
Best, Guy.
Describe the bug
Hey.
I want to translate the ensemble gene names into UniProit names but I get this error:
Traceback (most recent call last): File "rnalysis/gui/gui.py", line 2554, in redo File "rnalysis/gui/gui.py", line 2539, in redo File "rnalysis/gui/gui.py", line 1970, in _apply_function_from_params File "rnalysis/gui/gui.py", line 1356, in _apply_function_from_params File "rnalysis/filtering.py", line 392, in translate_gene_ids File "rnalysis/utils/io.py", line 1039, in map_gene_ids File "rnalysis/utils/io.py", line 1250, in _get_id_abbreviation_dicts FileNotFoundError: [Errno 2] No such file or directory: '/var/folders/6h/vt6qqj_n7s983x66mn0q_d9h0000gn/T/_MEI0jL4t9/rnalysis/utils/../data_files/uniprot_dataset_abbreviation_dict.json'
Here is the shortened file I used for this: head.csv
Is my RNAlysis installation missing data?
Steps To Reproduce
loaded table general translate gene IDs
(I also tried other translate to and also auto for translate from. As far as I can see the error message is always the same)
Expected behavior
No response
Screenshots
No response
How did you install RNAlysis?
Stand-alone app
RNAlysis version
3.6.0
Operating system
MacOS 12.7
Additional context
No response