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HBClab / NiBetaSeries

Nipype implementation of BetaSeries Correlations (Beta)
https://nibetaseries.readthedocs.io
MIT License
32 stars 28 forks source link

IndexError: list index out of range #328

Open LilianYou opened 4 years ago

LilianYou commented 4 years ago

Dear experts,

I'm encountering an error when using Nibetaseries. Is the error indicating that my event file does not match my nifti data?

Screen Shot 2020-10-15 at 11 32 12 PM Screen Shot 2020-10-15 at 11 31 53 PM

Also, I have a side question. The tutorial used Shaefer 2018 atlas but the atlas is only for the cerebral cortex. If I want to look at subcortical regions such as thalamus, is there any recommended atlas that can go well with nibetaseries?

Thanks, Lily

jdkent commented 4 years ago

Hi @LilianYou,

This error is indicating that the code cannot find the bold file, could you provide the names of the files for the bids directory you are using?

In a bash terminal, something like this could work. tree /path/to/bids/directory

For your side question, nibetaseries has not been "validated" on any atlases per say, so my loose recommendation would be to use any functionally derived atlas, and which one could depend on your research question and granularity you wish.

Hope that helps! James