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HKU-BAL / Clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
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r1041_e82_400bps_hac_v420 model of Guppy basecaller #264

Closed cuzzlisa closed 9 months ago

cuzzlisa commented 10 months ago

Hi, 

I'm aiming to execute clair3, but I couldn't find the r1041_e82_400bps_hac_v420 model of Guppy basecaller within rerio. The basecalling process was carried out by the sequencing company. Upon inspecting the read names in the Fastq files, I found the tag 'basecall_model_version_id=dna_r10.4.1_e8.2_400bps_hac@v4.2.0' embedded within. The Guppy version used is 7.1.4. Could you recommend the most suitable model for my analysis? Thank you!
aquaskyline commented 9 months ago

any dorado model trained for r10.4.1 hac data will work I think.

cuzzlisa commented 9 months ago

any dorado model trained for r10.4.1 hac data will work I think.

thank you!

eesiribloom commented 1 month ago

would the same apply to R9.4.1 data? i.e. Would a guppy R9.4.1 model be suitable for R9.4.1. data basecalled with dorado ?