I'm running clair3 without using the --qual flag to specify the cutoff. Some of my reported variants have LowQual and couldn't find the default value in the documentation. What Q score does clair3 default to without specifying using the --qual option?
aquaskyline
commented
7 months ago
Greetings,
I'm running clair3 without using the --qual flag to specify the cutoff. Some of my reported variants have LowQual and couldn't find the default value in the documentation. What Q score does clair3 default to without specifying using the --qual option?
Thanks