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HKU-BAL / Clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
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Which model should I use for R9.4.1 data basecalled with dorado #339

Closed eesiribloom closed 3 weeks ago

eesiribloom commented 1 month ago

I have R9.4.1 data basecalled with dorado (HAC). What is the most suitable model to use?

aquaskyline commented 1 month ago

r941 really needs the sup model for a good performance in variant calling. But if hac is what you have, r941_prom_sup_g5014 is the closest model for your data. Not a perfect match so don't use the model for production.