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HadrienG
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InSilicoSeq
:rocket: A sequencing simulator
https://insilicoseq.readthedocs.io
MIT License
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32
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Bump urllib3 from 2.1.0 to 2.2.2
#265
dependabot[bot]
opened
1 week ago
0
Traceback Error + Missing Temporary Fastq File
#264
ReginaEsinamAbotsi
opened
2 weeks ago
1
WARNING:iss.generator:--coverage_file disables --n_reads
#263
sahilrishav2
closed
5 days ago
5
Abundance file shows more genomes than are used
#262
Naturalist1986
opened
1 month ago
2
Bump requests from 2.31.0 to 2.32.0
#261
dependabot[bot]
closed
2 weeks ago
1
Bump idna from 3.4 to 3.7
#260
dependabot[bot]
closed
2 weeks ago
1
Bump black from 23.11.0 to 24.3.0
#259
dependabot[bot]
closed
2 weeks ago
1
Simulate (targeted) sequencing of single genes
#258
FreekManders
opened
3 months ago
0
Kingdom limitation
#257
TheLokj
closed
3 months ago
2
fragment length parameter not working
#256
Naturalist1986
closed
2 weeks ago
2
fix crash when using --coverage (#253)
#255
HadrienG
closed
4 months ago
0
temporary vcfs are not cleaned up
#254
HadrienG
opened
4 months ago
1
Bug: local variable 'n_reads' referenced before assignment when running with "coverage"
#253
ghoresh11
closed
4 months ago
3
Need help in simulation of whole metagenome data
#252
sahilrishav2
closed
4 months ago
4
Fixed the Dockerfile
#251
StefanLelieveld
closed
4 months ago
4
Saving inserted mutations/sequencing errors to a vcf file
#250
ThijsMaas
closed
4 months ago
0
New MiSeq and NextSeq error models
#249
StefanLelieveld
closed
4 months ago
1
update hiseq and novaseq profiles
#248
HadrienG
closed
4 months ago
0
Fix for insert size distributions
#247
HadrienG
closed
5 months ago
0
Amplicon performance update and features
#246
ThijsMaas
closed
5 months ago
1
Styling formatting rework
#245
ThijsMaas
closed
7 months ago
4
Bump urllib3 from 2.0.4 to 2.0.7
#244
dependabot[bot]
closed
4 months ago
1
Bump urllib3 from 2.0.4 to 2.0.6
#243
dependabot[bot]
closed
8 months ago
1
Additional Amplicon sequencing features
#242
ThijsMaas
closed
8 months ago
2
-u parameter should be -U
#241
till-bornemann
opened
9 months ago
0
[WIP] New release
#240
HadrienG
closed
4 months ago
3
Amplicon sequence generation (conflict free PR for merging)
#239
HadrienG
closed
9 months ago
0
Remove Unused Dependency: Future
#238
gdrosos
closed
9 months ago
2
1.6.0
#237
HadrienG
closed
10 months ago
0
Is this tool still supported?
#236
NenBarto
closed
10 months ago
1
More options for downloading genomes
#235
hh1985
closed
10 months ago
1
Support compressed genomes
#234
mbhall88
opened
11 months ago
1
Bio.Alphabet has been removed from Biopython
#233
Tgrandis
closed
10 months ago
2
'Seq' object has no attribute 'tomutable'
#232
Sanrrone
closed
1 year ago
2
coverage in chr19 of mm39 lower than other chromosomes
#231
lablancoberdugo
opened
1 year ago
1
Upgrade
#230
Harishsyk
closed
1 year ago
0
test failure with numpy 1.23.5
#229
emollier
closed
10 months ago
1
Consider switching to pytest
#228
mdb571
closed
10 months ago
1
Experimental groups
#227
magibc
closed
10 months ago
2
Amplicon plus
#226
ThijsMaas
closed
1 year ago
0
Amplicon sequence generation
#225
ThijsMaas
closed
9 months ago
1
Simulate targeted amplicon sequecing with MiSeq
#224
G-Molano-LA
closed
2 weeks ago
2
Simulating human mitochondrial reads from reference mitochondrial genome
#223
Rohit-Satyam
opened
1 year ago
2
Output the starting position of each sequence in the reference genome
#222
maojanlin
opened
1 year ago
0
Using abundance file with drafts/plasmids
#221
jlubin24
closed
10 months ago
1
Coverage file error
#220
esteinig
opened
2 years ago
1
Traceback Error + Temporary File Outputs
#219
epanousis
opened
2 years ago
1
Biopython error with custom modell: "TypeError: We only allow python sequences (lists, tuples or strings) of length 36"
#218
TakacsBertalan
closed
10 months ago
1
added test.txt
#217
tessad
closed
2 years ago
0
1.5.4
#216
HadrienG
closed
2 years ago
2
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