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Hintzelab / MABE

Modular Agent Based Evolution Framework
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Population Loader Bad Path on File on HPCC #63

Closed dkirkpatrick closed 7 years ago

dkirkpatrick commented 7 years ago

I have a set of files that runs fine locally:

//BEGIN EXCERPT// Loading from File population_loader.cfg

Loading 0 Random organisms Loading 0 Default organisms From file snapshot_organisms_200000.csv Loading organisms with IDs : 50000001 50000002 //END EXCERPT//

However, when the same program is run on the HPCC (submitted with MQ.qsub), it breaks:

//BEGIN EXCERPT// Loading from File population_loader.cfg error: unable to load../../../ls15/scratch/users/kirkpa48/C1_105__FDPTRN_AlternatingCornersWLDRST_1_1052017_11_27_22_25_11/snapshot_organisms_200000.csv //END EXCERPT//

The correct file is where it is supposed to be:

//BEGIN EXCERPT// [kirkpa48@dev-intel16 C1_105FDPTRN_AlternatingCornersWLDRST_1_1052017_11_27_22_25_11]$ ls C1_105__FDPTRN_AlternatingCornersWLDRST_1.out MQ.qsub settings_organism.cfg C1__FDPTRN_AlternatingCorners__WLDRST_1 population_loader.cfg settings_world.cfg MABE settings.cfg snapshot_organisms_200000.csv //END EXCERPT//

but something else seems to be going on in the filesystem. Please advise

JorySchossau commented 7 years ago

Try adding a './' in front of the path, like ./../../../ls15/scratch/users/kirkpa48/C1_105__FDPTRN_AlternatingCornersWLDRST_1_1052017_11_27_22_25_11/snapshot_organisms_200000.csv If no luck, then try putting the file in the same level or lower (as a subdir) of the dir where MABE is being run. These guesses are based on the bits of source I read while putting the new lib in. Check w/ Nitash on slack if it is a requirement that loaded csv files be at the same dir level or lower as MABE.

dkirkpatrick commented 7 years ago

The file (see ls output) is in the same directory and the file should be locally pathed (i.e. the source is MASTER = 'snapshot_organisms_200000.csv'). I'm not sure where the ../../../ls15/scratch/users/kirkpa48/C1_105__FDPTRN_AlternatingCornersWLDRST_1_1052017_11_27_22_25_11 portion is coming from

JorySchossau commented 7 years ago

Offlining to slack conversation.

On Tue, Nov 28, 2017 at 11:07 AM, Doug Kirkpatrick <notifications@github.com

wrote:

The file (see ls output) is in the same directory and the file should be locally pathed (i.e. the source is MASTER = 'snapshot_organisms_200000.csv'). I'm not sure where the ../../../ls15/scratch/users/ kirkpa48/C1_105__FDPTRN_AlternatingCornersWLDRST_1_1052017_11_27_22_25_11 portion is coming from

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