issues
search
HoffLab
/
biobakerymgx
Read-preprocessing, taxonomic classification, functional classification, strain analysis, and pangenome analysis using bioBakery tools
MIT License
0
stars
6
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Only run CI when merging into master branch
#23
CarsonJM
closed
4 months ago
0
Updated kneaddata db for hyak use
#22
LaurenGonsalves
closed
4 months ago
0
Check modules and biobakerymgx pipeline
#21
LaurenGonsalves
closed
4 months ago
0
Fix crazy kneaddata
#20
CarsonJM
closed
4 months ago
0
Updated snapshots and removed proxy code
#19
CarsonJM
closed
4 months ago
0
Fixed nf-tests, restructured test-data, and started fixing failing tests
#18
CarsonJM
closed
4 months ago
0
Fix repo structure so that tests run correctly
#17
CarsonJM
opened
4 months ago
0
Add fastq_preprocessing_kneaddata subworkflow to nf-core/modules
#16
CarsonJM
opened
4 months ago
0
Add kneaddata to nf-core/modules
#15
CarsonJM
opened
4 months ago
0
Add panphlan modules to nf-core/modules
#14
CarsonJM
opened
5 months ago
1
Add strainphlan modules to nf-core/modules
#13
CarsonJM
opened
5 months ago
1
Add FASTQ_READ_PREPROCESSING_KNEADDATA subworkflow to nf-core/modules
#12
CarsonJM
opened
5 months ago
1
Add humann modules to nf-core/modules
#11
CarsonJM
opened
5 months ago
2
Add FASTQ_FASTA_PANGENOME_PROFILING_PANPHLAN subworkflow to to nf-core/modules
#10
CarsonJM
opened
5 months ago
1
Add FASTQ_STRAIN_PROFILING_STRAINPHLAN subworkflow to nf-core/modules
#9
CarsonJM
opened
5 months ago
1
Add FASTQ_READ_FUNCTION_HUMANN subworkflow to nf-core/modules
#8
CarsonJM
opened
5 months ago
1
Merge nf-core template 2.13.1 into development branch
#7
CarsonJM
opened
5 months ago
0
Add FASTQ_TAXONOMIC_PROFILE_METAPHLAN to nf-core/modules
#6
CarsonJM
opened
5 months ago
1
Add nf-tests & stub to metaphlan nf-core/modules
#5
CarsonJM
opened
5 months ago
1
Add kneaddata modules to nf-core/modules
#4
CarsonJM
opened
5 months ago
1
Make sure all modules are using latest package versions
#3
CarsonJM
opened
5 months ago
1
Template update for nf-core/tools version 2.13
#2
CarsonJM
closed
6 months ago
0
Template update for nf-core/tools version 2.13
#1
CarsonJM
closed
6 months ago
0