HoffLab biobakerymgx issues

HoffLab / biobakerymgx

Read-preprocessing, taxonomic classification, functional classification, strain analysis, and pangenome analysis using bioBakery tools

MIT License

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Only run CI when merging into master branch

#23 CarsonJM closed 4 months ago
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Updated kneaddata db for hyak use

#22 LaurenGonsalves closed 4 months ago
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Check modules and biobakerymgx pipeline

#21 LaurenGonsalves closed 4 months ago
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Fix crazy kneaddata

#20 CarsonJM closed 4 months ago
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Updated snapshots and removed proxy code

#19 CarsonJM closed 4 months ago
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Fixed nf-tests, restructured test-data, and started fixing failing tests

#18 CarsonJM closed 4 months ago
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Fix repo structure so that tests run correctly

#17 CarsonJM opened 4 months ago
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Add fastq_preprocessing_kneaddata subworkflow to nf-core/modules

#16 CarsonJM opened 4 months ago
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Add kneaddata to nf-core/modules

#15 CarsonJM opened 4 months ago
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Add panphlan modules to nf-core/modules

#14 CarsonJM opened 5 months ago
1
Add strainphlan modules to nf-core/modules

#13 CarsonJM opened 5 months ago
1
Add FASTQ_READ_PREPROCESSING_KNEADDATA subworkflow to nf-core/modules

#12 CarsonJM opened 5 months ago
1
Add humann modules to nf-core/modules

#11 CarsonJM opened 5 months ago
2
Add FASTQ_FASTA_PANGENOME_PROFILING_PANPHLAN subworkflow to to nf-core/modules

#10 CarsonJM opened 5 months ago
1
Add FASTQ_STRAIN_PROFILING_STRAINPHLAN subworkflow to nf-core/modules

#9 CarsonJM opened 5 months ago
1
Add FASTQ_READ_FUNCTION_HUMANN subworkflow to nf-core/modules

#8 CarsonJM opened 5 months ago
1
Merge nf-core template 2.13.1 into development branch

#7 CarsonJM opened 5 months ago
0
Add FASTQ_TAXONOMIC_PROFILE_METAPHLAN to nf-core/modules

#6 CarsonJM opened 5 months ago
1
Add nf-tests & stub to metaphlan nf-core/modules

#5 CarsonJM opened 5 months ago
1
Add kneaddata modules to nf-core/modules

#4 CarsonJM opened 5 months ago
1
Make sure all modules are using latest package versions

#3 CarsonJM opened 5 months ago
1
Template update for nf-core/tools version 2.13

#2 CarsonJM closed 6 months ago
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Template update for nf-core/tools version 2.13

#1 CarsonJM closed 6 months ago
0