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hadoop 2.8.1 failed to install on 10.12.6 #17065

Closed gerrymiller closed 7 years ago

gerrymiller commented 7 years ago

Please always follow these steps:

Please note we will close your issue without comment if you delete or do not fill out the issue checklist and provide ALL the requested information.

Trying to update Hadoop (already installed) and am getting the following error:

| => brew update; brew upgrade; brew cleanup; brew prune; brew doctor; apm update --no-confirm
Already up-to-date.
==> Upgrading 3 outdated packages, with result:
hadoop 2.8.1, imagemagick 7.0.6-9, sshfs 2.10
==> Upgrading hadoop 
==> Downloading https://www.apache.org/dyn/closer.cgi?path=hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz
Already downloaded: /Users/gerry/Library/Caches/Homebrew/hadoop-2.8.1.tar.gz
Error: cannot load such file -- find
/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:55:in `require'
/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:55:in `require'
/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/lib/ruby/2.0.0/pathname.rb:542:in `find'
/usr/local/Homebrew/Library/Homebrew/download_strategy.rb:51:in `each'
/usr/local/Homebrew/Library/Homebrew/download_strategy.rb:51:in `select'
/usr/local/Homebrew/Library/Homebrew/download_strategy.rb:51:in `source_modified_time'
/usr/local/Homebrew/Library/Homebrew/resource.rb:95:in `block in unpack'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:14:in `block in mktemp'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:74:in `block in run'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:74:in `chdir'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:74:in `run'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:13:in `mktemp'
/usr/local/Homebrew/Library/Homebrew/resource.rb:93:in `unpack'
/usr/local/Homebrew/Library/Homebrew/resource.rb:85:in `stage'
/usr/local/Homebrew/Library/Homebrew/formula.rb:1884:in `stage'
/usr/local/Homebrew/Library/Homebrew/formula.rb:1088:in `brew'
/usr/local/Homebrew/Library/Homebrew/build.rb:114:in `block in install'
/usr/local/Homebrew/Library/Homebrew/utils.rb:554:in `with_env'
/usr/local/Homebrew/Library/Homebrew/build.rb:111:in `install'
/usr/local/Homebrew/Library/Homebrew/build.rb:188:in `<main>'
Warning: Skipping hadoop: most recent version 2.8.1 not installed
Warning: Skipping imagemagick: most recent version 7.0.6-9 not installed
Warning: Skipping sshfs: most recent version 2.10 not installed
Your system is ready to brew.
Package Updates Available (0)
└── (empty)

Some potential debugging info:

| ~ @ Gerry's MacBook (gerry) 
| => brew gist-logs hadoop
Error: No logs.
______________________________
| ~ @ Gerry's MacBook (gerry) 
| => brew config
HOMEBREW_VERSION: 1.3.1-69-g4b34ca5
ORIGIN: https://github.com/Homebrew/brew.git
HEAD: 4b34ca5b35b095e538b6e3bfe642eb57dad924ee
Last commit: 22 hours ago
Core tap ORIGIN: https://github.com/Homebrew/homebrew-core
Core tap HEAD: 5bbbb3a6a0711e7ecaacb1abdcc82f72ebd8db2d
Core tap last commit: 37 minutes ago
HOMEBREW_PREFIX: /usr/local
HOMEBREW_REPOSITORY: /usr/local/Homebrew
HOMEBREW_CELLAR: /usr/local/Cellar
HOMEBREW_BOTTLE_DOMAIN: https://homebrew.bintray.com
CPU: octa-core 64-bit skylake
Homebrew Ruby: 2.0.0-p648
Clang: 8.1 build 802
Git: 2.14.1 => /usr/local/bin/git
Perl: /usr/bin/perl
Python: /usr/local/opt/python/libexec/bin/python => /usr/local/Cellar/python/2.7.13_1/Frameworks/Python.framework/Versions/2.7/bin/python2.7
Ruby: /usr/bin/ruby => /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby
Java: 1.8.0_45
macOS: 10.12.6-x86_64
Xcode: 8.3.3
CLT: N/A
X11: N/A
______________________________
| ~ @ Gerry's MacBook (gerry) 
| => brew doctor
Your system is ready to brew.
ilovezfs commented 7 years ago

If you have any other suggestions I can try those when I get back online.

You can try with an older version to see if this is specific to 2.8.1.

git -C $(brew --repo homebrew/core) checkout fe4ca4c -- Formula/hadoop.rb
HOMEBREW_NO_AUTO_UPDATE=1 brew install hadoop

That should try 2.8.0.

gerrymiller commented 7 years ago

Looks like the reference to 2.8.0 isn't correct:

| => git -C $(brew --repo homebrew/core) checkout fe4ca4c -- Formula/hadoop.rb
fatal: invalid reference: fe4ca4c

Any idea what the actual commit ID for 2.8.0 is? I didn't see any release labels or tags, so I'm not sure how that's tracked with homebrew.

Thanks again.

ilovezfs commented 7 years ago

brew tap --full homebrew/core should fix that.

gerrymiller commented 7 years ago

Bingo:

| => brew tap --full homebrew/core 
==> Unshallowing homebrew/core
remote: Counting objects: 232792, done.
remote: Compressing objects: 100% (111977/111977), done.
remote: Total 232792 (delta 119162), reused 231572 (delta 118031), pack-reused 0
Receiving objects: 100% (232792/232792), 49.51 MiB | 1.65 MiB/s, done.
Resolving deltas: 100% (119162/119162), completed with 3174 local objects.
______________________________
| ~ @ Gerry's MacBook (gerry) 
| => git -C $(brew --repo homebrew/core) checkout fe4ca4c -- Formula/hadoop.rb
______________________________
| ~ @ Gerry's MacBook (gerry) 
| => HOMEBREW_NO_AUTO_UPDATE=1 brew install hadoop
==> Downloading https://www.apache.org/dyn/closer.cgi?path=hadoop/common/hadoop-2.8.0/hadoop-2.8.0.tar.gz
==> Best Mirror http://www-eu.apache.org/dist/hadoop/common/hadoop-2.8.0/hadoop-2.8.0.tar.gz
######################################################################## 100.0%
==> Caveats
In Hadoop's config file:
  /usr/local/opt/hadoop/libexec/etc/hadoop/hadoop-env.sh,
  /usr/local/opt/hadoop/libexec/etc/hadoop/mapred-env.sh and
  /usr/local/opt/hadoop/libexec/etc/hadoop/yarn-env.sh
$JAVA_HOME has been set to be the output of:
  /usr/libexec/java_home
==> Summary
🍺  /usr/local/Cellar/hadoop/2.8.0: 25,169 files, 2.1GB, built in 6 minutes 49 seconds

Any thoughts on what might have broken this in 2.8.1?

ilovezfs commented 7 years ago

Not yet :)

ilovezfs commented 7 years ago

Can you try this?

mkdir /tmp/hadoop-tmp
cp ~/Library/Caches/Homebrew/hadoop-2.8.1.tar.gz /tmp/hadoop-tmp/
cd /tmp/hadoop-tmp
tar xf hadoop-2.8.1.tar.gz
cd hadoop-2.8.1

Then run brew irb

iMac-TMP:hadoop-2.8.1 joe$ brew irb
==> Interactive Homebrew Shell
Example commands available with: brew irb --examples
irb(main):001:0> Pathname.pwd.to_enum(:find).select(&:file?).map(&:mtime).max
=> 2017-06-01 23:49:58 -0700
irb(main):002:0>
gerrymiller commented 7 years ago 
| /tmp/hadoop-tmp @ Gerry's MacBook (gerry) 
| => cd hadoop-2.8.1
total 120
-rw-r--r--   1 gerry  wheel    97K Jun  2 08:24 LICENSE.txt
-rw-r--r--   1 gerry  wheel    16K Jun  2 08:24 NOTICE.txt
-rw-r--r--   1 gerry  wheel   1.3K Jun  2 08:24 README.txt
drwxr-xr-x  13 gerry  wheel   442B Jun  2 08:24 bin/
drwxr-xr-x   3 gerry  wheel   102B Jun  2 08:24 etc/
drwxr-xr-x   7 gerry  wheel   238B Jun  2 08:24 include/
drwxr-xr-x   3 gerry  wheel   102B Jun  2 08:24 lib/
drwxr-xr-x  12 gerry  wheel   408B Jun  2 08:24 libexec/
drwxr-xr-x  30 gerry  wheel   1.0K Jun  2 08:24 sbin/
drwxr-xr-x   4 gerry  wheel   136B Jun  2 08:24 share/
______________________________
| /tmp/hadoop-tmp/hadoop-2.8.1 @ Gerry's MacBook (gerry) 
| => brew irb
==> Interactive Homebrew Shell
Example commands available with: brew irb --examples
irb(main):001:0> Pathname.pwd.to_enum(:find).select(&:file?).map(&:mtime).max
=> 2017-06-02 08:49:58 +0200
irb(main):002:0>
ilovezfs commented 7 years ago

OK. And what happens if you

cd $(brew --repo homebrew/core)
git reset --hard origin/master
brew upgrade hadoop
gerrymiller commented 7 years ago

Back to failure:

| => cd $(brew --repo homebrew/core)
total 32
drwxr-xr-x    15 gerry  wheel   510B Sep  6 11:10 .git/
drwxr-xr-x     5 gerry  wheel   170B Aug 28 06:11 .github/
drwxr-xr-x   228 gerry  wheel   7.6K Sep  6 10:39 Aliases/
-rw-r--r--     1 gerry  wheel   3.1K Apr 27 17:14 CODEOFCONDUCT.md
-rw-r--r--     1 gerry  wheel   1.6K Aug  8 16:04 CONTRIBUTING.md
drwxr-xr-x  4343 gerry  wheel   144K Sep  6 11:10 Formula/
-rw-r--r--     1 gerry  wheel   2.7K Apr 27 17:14 Jenkinsfile
-rw-r--r--     1 gerry  wheel   1.3K Apr 27 17:14 LICENSE.txt
-rw-r--r--     1 gerry  wheel   1.0K Aug  8 16:04 README.md
-rw-r--r--     1 gerry  wheel   4.8K Sep  4 08:27 formula_renames.json
-rw-r--r--     1 gerry  wheel   1.7K Aug 21 16:04 tap_migrations.json
______________________________
| /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core @ Gerry's MacBook (gerry) 
| => git reset --hard origin/master
HEAD is now at d914b456d5 cheat: update 2.2.1 bottle.
______________________________
| /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core @ Gerry's MacBook (gerry) 
| => brew upgrade hadoop
Updating Homebrew...
==> Auto-updated Homebrew!
Updated 1 tap (homebrew/core).
==> Updated Formulae
cmark-gfm           crash               libxml2 ✔           opendetex           telegraf            trafficserver       valabind

==> Upgrading 1 outdated package, with result:
hadoop 2.8.1
==> Upgrading hadoop 
==> Downloading https://www.apache.org/dyn/closer.cgi?path=hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz
Already downloaded: /Users/gerry/Library/Caches/Homebrew/hadoop-2.8.1.tar.gz
Error: cannot load such file -- find
/usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.0.0-p648/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:55:in `require'
/usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.0.0-p648/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:55:in `require'
/usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.0.0-p648/lib/ruby/2.0.0/pathname.rb:542:in `find'
/usr/local/Homebrew/Library/Homebrew/download_strategy.rb:51:in `each'
/usr/local/Homebrew/Library/Homebrew/download_strategy.rb:51:in `select'
/usr/local/Homebrew/Library/Homebrew/download_strategy.rb:51:in `source_modified_time'
/usr/local/Homebrew/Library/Homebrew/resource.rb:95:in `block in unpack'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:14:in `block in mktemp'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:74:in `block in run'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:74:in `chdir'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:74:in `run'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:13:in `mktemp'
/usr/local/Homebrew/Library/Homebrew/resource.rb:93:in `unpack'
/usr/local/Homebrew/Library/Homebrew/resource.rb:85:in `stage'
/usr/local/Homebrew/Library/Homebrew/formula.rb:1887:in `stage'
/usr/local/Homebrew/Library/Homebrew/formula.rb:1088:in `brew'
/usr/local/Homebrew/Library/Homebrew/build.rb:114:in `block in install'
/usr/local/Homebrew/Library/Homebrew/utils.rb:554:in `with_env'
/usr/local/Homebrew/Library/Homebrew/build.rb:111:in `install'
/usr/local/Homebrew/Library/Homebrew/build.rb:188:in `<main>'
ilovezfs commented 7 years ago

OK. And what does this do now

HOMEBREW_ENV_FILTERING=1 HOMEBREW_NO_AUTO_UPDATE=1 brew upgrade -dv hadoop
gerrymiller commented 7 years ago 
| => HOMEBREW_ENV_FILTERING=1 HOMEBREW_NO_AUTO_UPDATE=1 brew upgrade -dv hadoop
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::FormulaLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/hadoop.rb
==> Upgrading 1 outdated package, with result:
hadoop 2.8.1
==> Upgrading hadoop 
rm /usr/local/bin/container-executor
rm /usr/local/bin/hadoop
rm /usr/local/bin/hdfs
rm /usr/local/bin/mapred
rm /usr/local/bin/test-container-executor
rm /usr/local/bin/yarn
rm /usr/local/sbin/distribute-exclude.sh
rm /usr/local/sbin/hadoop-daemon.sh
rm /usr/local/sbin/hadoop-daemons.sh
rm /usr/local/sbin/hdfs-config.sh
rm /usr/local/sbin/httpfs.sh
rm /usr/local/sbin/kms.sh
rm /usr/local/sbin/mr-jobhistory-daemon.sh
rm /usr/local/sbin/refresh-namenodes.sh
rm /usr/local/sbin/slaves.sh
rm /usr/local/sbin/start-all.sh
rm /usr/local/sbin/start-balancer.sh
rm /usr/local/sbin/start-dfs.sh
rm /usr/local/sbin/start-secure-dns.sh
rm /usr/local/sbin/start-yarn.sh
rm /usr/local/sbin/stop-all.sh
rm /usr/local/sbin/stop-balancer.sh
rm /usr/local/sbin/stop-dfs.sh
rm /usr/local/sbin/stop-secure-dns.sh
rm /usr/local/sbin/stop-yarn.sh
rm /usr/local/sbin/yarn-daemon.sh
rm /usr/local/sbin/yarn-daemons.sh
/usr/bin/sandbox-exec -f /Users/gerry/mytemp/homebrew20170906-51178-1kk8zh8.sb nice /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.0.0-p648/bin/ruby -W0 -I /usr/local/Homebrew/Library/Homebrew -- /usr/local/Homebrew/Library/Homebrew/build.rb /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/hadoop.rb --verbose --debug
/usr/local/Homebrew/Library/Homebrew/build.rb (Formulary::FromPathLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/hadoop.rb
==> Downloading https://www.apache.org/dyn/closer.cgi?path=hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz
Already downloaded: /Users/gerry/Library/Caches/Homebrew/hadoop-2.8.1.tar.gz
==> Verifying hadoop-2.8.1.tar.gz checksum
tar xzf /Users/gerry/Library/Caches/Homebrew/hadoop-2.8.1.tar.gz
ln -s ../Cellar/hadoop/2.8.0/bin/container-executor container-executor
ln -s ../Cellar/hadoop/2.8.0/bin/hadoop hadoop
ln -s ../Cellar/hadoop/2.8.0/bin/hdfs hdfs
ln -s ../Cellar/hadoop/2.8.0/bin/mapred mapred
ln -s ../Cellar/hadoop/2.8.0/bin/test-container-executor test-container-executor
ln -s ../Cellar/hadoop/2.8.0/bin/yarn yarn
ln -s ../Cellar/hadoop/2.8.0/sbin/distribute-exclude.sh distribute-exclude.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/hadoop-daemon.sh hadoop-daemon.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/hadoop-daemons.sh hadoop-daemons.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/hdfs-config.sh hdfs-config.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/httpfs.sh httpfs.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/kms.sh kms.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/mr-jobhistory-daemon.sh mr-jobhistory-daemon.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/refresh-namenodes.sh refresh-namenodes.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/slaves.sh slaves.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/start-all.sh start-all.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/start-balancer.sh start-balancer.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/start-dfs.sh start-dfs.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/start-secure-dns.sh start-secure-dns.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/start-yarn.sh start-yarn.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/stop-all.sh stop-all.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/stop-balancer.sh stop-balancer.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/stop-dfs.sh stop-dfs.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/stop-secure-dns.sh stop-secure-dns.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/stop-yarn.sh stop-yarn.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/yarn-daemon.sh yarn-daemon.sh
ln -s ../Cellar/hadoop/2.8.0/sbin/yarn-daemons.sh yarn-daemons.sh
Error: cannot load such file -- find
/usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.0.0-p648/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:55:in `require'
/usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.0.0-p648/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:55:in `require'
/usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.0.0-p648/lib/ruby/2.0.0/pathname.rb:542:in `find'
/usr/local/Homebrew/Library/Homebrew/download_strategy.rb:51:in `each'
/usr/local/Homebrew/Library/Homebrew/download_strategy.rb:51:in `select'
/usr/local/Homebrew/Library/Homebrew/download_strategy.rb:51:in `source_modified_time'
/usr/local/Homebrew/Library/Homebrew/resource.rb:95:in `block in unpack'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:14:in `block in mktemp'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:74:in `block in run'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:74:in `chdir'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:74:in `run'
/usr/local/Homebrew/Library/Homebrew/extend/fileutils.rb:13:in `mktemp'
/usr/local/Homebrew/Library/Homebrew/resource.rb:93:in `unpack'
/usr/local/Homebrew/Library/Homebrew/resource.rb:85:in `stage'
/usr/local/Homebrew/Library/Homebrew/formula.rb:1887:in `stage'
/usr/local/Homebrew/Library/Homebrew/formula.rb:1088:in `brew'
/usr/local/Homebrew/Library/Homebrew/build.rb:114:in `block in install'
/usr/local/Homebrew/Library/Homebrew/utils.rb:554:in `with_env'
/usr/local/Homebrew/Library/Homebrew/build.rb:111:in `install'
/usr/local/Homebrew/Library/Homebrew/build.rb:188:in `<main>'
gerrymiller commented 7 years ago

I'll be AFK for a few hours, and will try any additional suggestions you have this evening European Central Time. Thank you!

ilovezfs commented 7 years ago

What's the output of gem list?

gerrymiller commented 7 years ago 
| => gem list

*** LOCAL GEMS ***

aws-sdk (2.2.27)
aws-sdk-core (2.2.27)
aws-sdk-resources (2.2.27)
bigdecimal (1.2.0)
brewdler (0.4.1)
bundler (1.11.2, 1.3.5)
CFPropertyList (2.2.8)
chunky_png (1.2.8)
commander (4.1.3)
compass (0.12.2)
daemons (1.1.9)
eventmachine (1.0.3)
fssm (0.2.10)
highline (1.6.19)
io-console (0.4.2)
jmespath (1.1.3)
json (1.7.7)
libxml-ruby (2.6.0)
minitest (4.3.2)
nokogiri (1.5.6)
psych (2.0.0)
rack (1.1.0)
rack-try_static (0.1.1)
rake (10.5.0, 0.9.6)
rdoc (4.0.0)
sass (3.2.9)
sqlite3 (1.3.7)
test-unit (2.0.0.0)
thin (1.5.1)
thor (0.19.1)
ilovezfs commented 7 years ago

Can you post the output of env but be sure to strip out any API token, etc.?

gerrymiller commented 7 years ago 
| => env
TERM_PROGRAM=Apple_Terminal
HOMEBREW_TEMP=/Users/gerry/mytemp
SHELL=/bin/bash
TERM=xterm-256color
TMPDIR=/var/folders/cl/rk8c_n65471274j6vh56b7b80000gn/T/
Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.7NaoMsqwW7/Render
TERM_PROGRAM_VERSION=388.1.1
OLDPWD=/Users/gerry
TERM_SESSION_ID=<snip>
SVN_EDITOR=atom
USER=gerry
SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.PO3w1cllTL/Listeners
__CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0
LSCOLORS=GxFxCxDxBxegedabagaced
PATH=/usr/local/bin:/usr/local/sbin:/opt/local/bin:/opt/local/sbin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/git/bin:/usr/local/MacGPG2/bin:/bin
BLOCKSIZE=1k
SCRIPT_HOME=/usr/local/scripts
PWD=/usr/local/Homebrew/Library/Taps/homebrew/homebrew-core
EDITOR=/usr/local/bin/atom
LANG=en_US.UTF-8
MONO_GAC_PREFIX=/usr/local
XPC_FLAGS=0x0
PS1=______________________________\n| \w @ \h (\u) \n| => 
PS2=| => 
XPC_SERVICE_NAME=0
SHLVL=1
HOME=/Users/gerry
GREP_OPTIONS=-D skip --binary-files=without-match --ignore-case
OpenSSL_HOME=/usr/local/ssl
LOGNAME=gerry
_=/usr/bin/env
gerrymiller commented 7 years ago

Hi @ilovezfs, I'm online for the next few hours if you have any more suggestions.

ilovezfs commented 7 years ago

@gerrymiller does this work?

diff --git a/Formula/hadoop.rb b/Formula/hadoop.rb
index 5d578a06a3..d3e93a2665 100644
--- a/Formula/hadoop.rb
+++ b/Formula/hadoop.rb
@@ -1,7 +1,8 @@
 class Hadoop < Formula
   desc "Framework for distributed processing of large data sets"
   homepage "https://hadoop.apache.org/"
-  url "https://www.apache.org/dyn/closer.cgi?path=hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz"
+  url "https://www.apache.org/dyn/closer.cgi?path=hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz",
+      :using => :nounzip
   mirror "https://archive.apache.org/dist/hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz"
   sha256 "b5be527578ef2c8565cd435ab4ae71a024cad704f7bf597bd792082703bd77d9"

@@ -10,6 +11,8 @@ class Hadoop < Formula
   depends_on :java => "1.7+"

   def install
+    system "tar", "xf", "hadoop-2.8.1.tar.gz"
+    cd "hadoop-2.8.1"
     rm_f Dir["bin/*.cmd", "sbin/*.cmd", "libexec/*.cmd", "etc/hadoop/*.cmd"]
     libexec.install %w[bin sbin libexec share etc]
     bin.write_exec_script Dir["#{libexec}/bin/*"]
gerrymiller commented 7 years ago

Nope:

| => brew upgrade hadoop
Updating Homebrew...
==> Auto-updated Homebrew!
Updated 2 taps (caskroom/cask, homebrew/core).
==> Updated Formulae
ace                                                                   lynis

==> Upgrading 1 outdated package, with result:
hadoop 2.8.1
==> Upgrading hadoop 
==> Downloading https://www.apache.org/dyn/closer.cgi?path=hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz
Already downloaded: /Users/gerry/Library/Caches/Homebrew/hadoop-2.8.1.tar.gz
==> tar xf hadoop-2.8.1.tar.gz
Error: Interrupted system call - /usr/local/Cellar/hadoop/2.8.1/libexec/etc/hadoop/hadoop-env.sh
ilovezfs commented 7 years ago

What's the output of

git -C $(brew --repo homebrew/core) diff
gerrymiller commented 7 years ago 
| => git -C $(brew --repo homebrew/core) diff
diff --git a/Formula/hadoop.rb b/Formula/hadoop.rb
index 5d578a06a3..d3e93a2665 100644
--- a/Formula/hadoop.rb
+++ b/Formula/hadoop.rb
@@ -1,7 +1,8 @@
 class Hadoop < Formula
   desc "Framework for distributed processing of large data sets"
   homepage "https://hadoop.apache.org/"
-  url "https://www.apache.org/dyn/closer.cgi?path=hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz"
+  url "https://www.apache.org/dyn/closer.cgi?path=hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz",
+      :using => :nounzip
   mirror "https://archive.apache.org/dist/hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz"
   sha256 "b5be527578ef2c8565cd435ab4ae71a024cad704f7bf597bd792082703bd77d9"

@@ -10,6 +11,8 @@ class Hadoop < Formula
   depends_on :java => "1.7+"

   def install
+    system "tar", "xf", "hadoop-2.8.1.tar.gz"
+    cd "hadoop-2.8.1"
     rm_f Dir["bin/*.cmd", "sbin/*.cmd", "libexec/*.cmd", "etc/hadoop/*.cmd"]
     libexec.install %w[bin sbin libexec share etc]
     bin.write_exec_script Dir["#{libexec}/bin/*"]
ilovezfs commented 7 years ago

OK, try running

brew upgrade -dv hadoop
ilovezfs commented 7 years ago

also you should set HOMEBREW_NO_AUTO_UPDATE=1 while doing this

gerrymiller commented 7 years ago

Which action do you want me to choose?

| => HOMEBREW_NO_AUTO_UPDATE=1 brew upgrade -dv hadoop
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::FormulaLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/hadoop.rb
==> Upgrading 1 outdated package, with result:
hadoop 2.8.1
==> Upgrading hadoop 
rm /usr/local/bin/container-executor
rm /usr/local/bin/hadoop
rm /usr/local/bin/hdfs
rm /usr/local/bin/mapred
rm /usr/local/bin/test-container-executor
rm /usr/local/bin/yarn
rm /usr/local/sbin/distribute-exclude.sh
rm /usr/local/sbin/hadoop-daemon.sh
rm /usr/local/sbin/hadoop-daemons.sh
rm /usr/local/sbin/hdfs-config.sh
rm /usr/local/sbin/httpfs.sh
rm /usr/local/sbin/kms.sh
rm /usr/local/sbin/mr-jobhistory-daemon.sh
rm /usr/local/sbin/refresh-namenodes.sh
rm /usr/local/sbin/slaves.sh
rm /usr/local/sbin/start-all.sh
rm /usr/local/sbin/start-balancer.sh
rm /usr/local/sbin/start-dfs.sh
rm /usr/local/sbin/start-secure-dns.sh
rm /usr/local/sbin/start-yarn.sh
rm /usr/local/sbin/stop-all.sh
rm /usr/local/sbin/stop-balancer.sh
rm /usr/local/sbin/stop-dfs.sh
rm /usr/local/sbin/stop-secure-dns.sh
rm /usr/local/sbin/stop-yarn.sh
rm /usr/local/sbin/yarn-daemon.sh
rm /usr/local/sbin/yarn-daemons.sh
/usr/bin/sandbox-exec -f /Users/gerry/mytemp/homebrew20170907-8510-vjd2cp.sb nice /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.0.0-p648/bin/ruby -W0 -I /usr/local/Homebrew/Library/Homebrew -- /usr/local/Homebrew/Library/Homebrew/build.rb /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/hadoop.rb --verbose --debug
/usr/local/Homebrew/Library/Homebrew/build.rb (Formulary::FromPathLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/hadoop.rb
==> Downloading https://www.apache.org/dyn/closer.cgi?path=hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz
Already downloaded: /Users/gerry/Library/Caches/Homebrew/hadoop-2.8.1.tar.gz
==> Verifying hadoop-2.8.1.tar.gz checksum
==> tar xf hadoop-2.8.1.tar.gz
/usr/local/Homebrew/Library/Homebrew/utils/inreplace.rb:23:in `initialize'
Errno::EINTR: Interrupted system call - /usr/local/Cellar/hadoop/2.8.1/libexec/etc/hadoop/hadoop-env.sh
1. raise
2. backtrace
3. shell
Choose an action:
ilovezfs commented 7 years ago

Choose 3 and then ls

gerrymiller commented 7 years ago 
Choose an action: 3   
When you exit this shell, you will return to the menu.
bash-3.2$ ls
LICENSE.txt NOTICE.txt  README.txt  include     lib
bash-3.2$
ilovezfs commented 7 years ago 
ls -al /usr/local/Cellar/hadoop/2.8.1/libexec/etc/hadoop/hadoop-env.sh
gerrymiller commented 7 years ago 
bash-3.2$ ls -al /usr/local/Cellar/hadoop/2.8.1/libexec/etc/hadoop/hadoop-env.sh
-rw-r--r--  1 gerry  staff  4666 Jun  2 08:24 /usr/local/Cellar/hadoop/2.8.1/libexec/etc/hadoop/hadoop-env.sh
ilovezfs commented 7 years ago

OK, control+D and then try again with this diff:

diff --git a/Formula/hadoop.rb b/Formula/hadoop.rb
index 5d578a06a3..8e950c3042 100644
--- a/Formula/hadoop.rb
+++ b/Formula/hadoop.rb
@@ -1,7 +1,8 @@
 class Hadoop < Formula
   desc "Framework for distributed processing of large data sets"
   homepage "https://hadoop.apache.org/"
-  url "https://www.apache.org/dyn/closer.cgi?path=hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz"
+  url "https://www.apache.org/dyn/closer.cgi?path=hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz",
+      :using => :nounzip
   mirror "https://archive.apache.org/dist/hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz"
   sha256 "b5be527578ef2c8565cd435ab4ae71a024cad704f7bf597bd792082703bd77d9"

@@ -10,6 +11,8 @@ class Hadoop < Formula
   depends_on :java => "1.7+"

   def install
+    system "tar", "xf", "hadoop-2.8.1.tar.gz"
+    cd "hadoop-2.8.1"
     rm_f Dir["bin/*.cmd", "sbin/*.cmd", "libexec/*.cmd", "etc/hadoop/*.cmd"]
     libexec.install %w[bin sbin libexec share etc]
     bin.write_exec_script Dir["#{libexec}/bin/*"]
@@ -17,6 +20,7 @@ class Hadoop < Formula
     # But don't make rcc visible, it conflicts with Qt
     (bin/"rcc").unlink

+=begin
     inreplace "#{libexec}/etc/hadoop/hadoop-env.sh",
       "export JAVA_HOME=${JAVA_HOME}",
       "export JAVA_HOME=\"$(/usr/libexec/java_home)\""
@@ -26,6 +30,7 @@ class Hadoop < Formula
     inreplace "#{libexec}/etc/hadoop/mapred-env.sh",
       "# export JAVA_HOME=/home/y/libexec/jdk1.6.0/",
       "export JAVA_HOME=\"$(/usr/libexec/java_home)\""
+=end
   end

   def caveats; <<-EOS.undent
gerrymiller commented 7 years ago

Before I do this, is this what the final file is supposed to look like?

class Hadoop < Formula
  desc "Framework for distributed processing of large data sets"
  homepage "https://hadoop.apache.org/"
  url "https://www.apache.org/dyn/closer.cgi?path=hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz",
      :using => :nounzip
  mirror "https://archive.apache.org/dist/hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz"
  sha256 "b5be527578ef2c8565cd435ab4ae71a024cad704f7bf597bd792082703bd77d9"

  depends_on :java => "1.7+"

  def install
    system "tar", "xf", "hadoop-2.8.1.tar.gz"
    cd "hadoop-2.8.1"
    rm_f Dir["bin/*.cmd", "sbin/*.cmd", "libexec/*.cmd", "etc/hadoop/*.cmd"]
    libexec.install %w[bin sbin libexec share etc]
    bin.write_exec_script Dir["#{libexec}/bin/*"]
    sbin.write_exec_script Dir["#{libexec}/sbin/*"]
    # But don't make rcc visible, it conflicts with Qt
    (bin/"rcc").unlink

    inreplace "#{libexec}/etc/hadoop/hadoop-env.sh",
      "export JAVA_HOME=${JAVA_HOME}",
      "export JAVA_HOME=\"$(/usr/libexec/java_home)\""
    inreplace "#{libexec}/etc/hadoop/mapred-env.sh",
      "# export JAVA_HOME=/home/y/libexec/jdk1.6.0/",
      "export JAVA_HOME=\"$(/usr/libexec/java_home)\""
  end

  def caveats; <<-EOS.undent
    In Hadoop's config file:
      #{libexec}/etc/hadoop/hadoop-env.sh,
      #{libexec}/etc/hadoop/mapred-env.sh and
      #{libexec}/etc/hadoop/yarn-env.sh
    $JAVA_HOME has been set to be the output of:
      /usr/libexec/java_home
    EOS
  end

  test do
    system bin/"hadoop", "fs", "-ls"
  end
end
ilovezfs commented 7 years ago

No you're missing the =begin and =end to comment the section out.

gerrymiller commented 7 years ago

It's running now, and a whole lot longer than it has in the past, so that may be a good sign. Please stay tuned.

gerrymiller commented 7 years ago

Seems to have worked:

| => HOMEBREW_NO_AUTO_UPDATE=1 brew upgrade -dv hadoop
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::FormulaLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/hadoop.rb
==> Upgrading 1 outdated package, with result:
hadoop 2.8.1
==> Upgrading hadoop 
rm /usr/local/bin/container-executor
rm /usr/local/bin/hadoop
rm /usr/local/bin/hdfs
rm /usr/local/bin/mapred
rm /usr/local/bin/test-container-executor
rm /usr/local/bin/yarn
rm /usr/local/sbin/distribute-exclude.sh
rm /usr/local/sbin/hadoop-daemon.sh
rm /usr/local/sbin/hadoop-daemons.sh
rm /usr/local/sbin/hdfs-config.sh
rm /usr/local/sbin/httpfs.sh
rm /usr/local/sbin/kms.sh
rm /usr/local/sbin/mr-jobhistory-daemon.sh
rm /usr/local/sbin/refresh-namenodes.sh
rm /usr/local/sbin/slaves.sh
rm /usr/local/sbin/start-all.sh
rm /usr/local/sbin/start-balancer.sh
rm /usr/local/sbin/start-dfs.sh
rm /usr/local/sbin/start-secure-dns.sh
rm /usr/local/sbin/start-yarn.sh
rm /usr/local/sbin/stop-all.sh
rm /usr/local/sbin/stop-balancer.sh
rm /usr/local/sbin/stop-dfs.sh
rm /usr/local/sbin/stop-secure-dns.sh
rm /usr/local/sbin/stop-yarn.sh
rm /usr/local/sbin/yarn-daemon.sh
rm /usr/local/sbin/yarn-daemons.sh
/usr/bin/sandbox-exec -f /Users/gerry/mytemp/homebrew20170907-12498-19o27r1.sb nice /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.0.0-p648/bin/ruby -W0 -I /usr/local/Homebrew/Library/Homebrew -- /usr/local/Homebrew/Library/Homebrew/build.rb /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/hadoop.rb --verbose --debug
/usr/local/Homebrew/Library/Homebrew/build.rb (Formulary::FromPathLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/hadoop.rb
==> Downloading https://www.apache.org/dyn/closer.cgi?path=hadoop/common/hadoop-2.8.1/hadoop-2.8.1.tar.gz
Already downloaded: /Users/gerry/Library/Caches/Homebrew/hadoop-2.8.1.tar.gz
==> Verifying hadoop-2.8.1.tar.gz checksum
==> tar xf hadoop-2.8.1.tar.gz
==> Cleaning
Fixing /usr/local/Cellar/hadoop/2.8.1/bin/container-executor permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/bin/hadoop permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/bin/hdfs permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/bin/mapred permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/bin/test-container-executor permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/bin/yarn permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/distribute-exclude.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/hadoop-daemon.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/hadoop-daemons.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/hdfs-config.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/httpfs.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/kms.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/mr-jobhistory-daemon.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/refresh-namenodes.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/slaves.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/start-all.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/start-balancer.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/start-dfs.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/start-secure-dns.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/start-yarn.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/stop-all.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/stop-balancer.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/stop-dfs.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/stop-secure-dns.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/stop-yarn.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/yarn-daemon.sh permissions from 644 to 555
Fixing /usr/local/Cellar/hadoop/2.8.1/sbin/yarn-daemons.sh permissions from 644 to 555
==> Finishing up
ln -s ../Cellar/hadoop/2.8.1/bin/container-executor container-executor
ln -s ../Cellar/hadoop/2.8.1/bin/hadoop hadoop
ln -s ../Cellar/hadoop/2.8.1/bin/hdfs hdfs
ln -s ../Cellar/hadoop/2.8.1/bin/mapred mapred
ln -s ../Cellar/hadoop/2.8.1/bin/test-container-executor test-container-executor
ln -s ../Cellar/hadoop/2.8.1/bin/yarn yarn
ln -s ../Cellar/hadoop/2.8.1/sbin/distribute-exclude.sh distribute-exclude.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/hadoop-daemon.sh hadoop-daemon.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/hadoop-daemons.sh hadoop-daemons.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/hdfs-config.sh hdfs-config.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/httpfs.sh httpfs.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/kms.sh kms.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/mr-jobhistory-daemon.sh mr-jobhistory-daemon.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/refresh-namenodes.sh refresh-namenodes.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/slaves.sh slaves.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/start-all.sh start-all.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/start-balancer.sh start-balancer.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/start-dfs.sh start-dfs.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/start-secure-dns.sh start-secure-dns.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/start-yarn.sh start-yarn.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/stop-all.sh stop-all.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/stop-balancer.sh stop-balancer.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/stop-dfs.sh stop-dfs.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/stop-secure-dns.sh stop-secure-dns.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/stop-yarn.sh stop-yarn.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/yarn-daemon.sh yarn-daemon.sh
ln -s ../Cellar/hadoop/2.8.1/sbin/yarn-daemons.sh yarn-daemons.sh
/usr/bin/sandbox-exec -f /Users/gerry/mytemp/homebrew20170907-13483-1alpxvg.sb nice /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.0.0-p648/bin/ruby -W0 -I /usr/local/Homebrew/Library/Homebrew -- /usr/local/Homebrew/Library/Homebrew/postinstall.rb /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/hadoop.rb -dv
/usr/local/Homebrew/Library/Homebrew/postinstall.rb (Formulary::FromPathLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/hadoop.rb
==> Caveats
In Hadoop's config file:
  /usr/local/opt/hadoop/libexec/etc/hadoop/hadoop-env.sh,
  /usr/local/opt/hadoop/libexec/etc/hadoop/mapred-env.sh and
  /usr/local/opt/hadoop/libexec/etc/hadoop/yarn-env.sh
$JAVA_HOME has been set to be the output of:
  /usr/libexec/java_home
==> Summary
🍺  /usr/local/Cellar/hadoop/2.8.1: 25,230 files, 2.1GB, built in 8 minutes 44 seconds
ilovezfs commented 7 years ago

Yeah, so if you want to use that installation, you can manually replace all instances of

export JAVA_HOME=${JAVA_HOME}

with

export JAVA_HOME="$(/usr/libexec/java_home)"

in /usr/local/Cellar/hadoop/2.8.1/libexec/etc/hadoop/hadoop-env.sh

and

# export JAVA_HOME=/home/y/libexec/jdk1.6.0/

with

export JAVA_HOME="$(/usr/libexec/java_home)"

in /usr/local/Cellar/hadoop/2.8.1/libexec/etc/hadoop/yarn-env.sh

and

# export JAVA_HOME=/home/y/libexec/jdk1.6.0/

with

export JAVA_HOME="$(/usr/libexec/java_home)"

in /usr/local/Cellar/hadoop/2.8.1/libexec/etc/hadoop/mapred-env.sh

Something does seem quite wrong with your system, though. Neither the Errno::EINTR: Interrupted system call nor the Error: cannot load such file -- find make any sense to me.

ilovezfs commented 7 years ago

Crazy question: do you have any antivirus software or similar installed?

gerrymiller commented 7 years ago

Yes, I do. Why do you think that might trip?

gerrymiller commented 7 years ago

I checked and don't see any security issue flagged in my AV software.

ilovezfs commented 7 years ago

Your system freaks out in two different weird ways with the 2.8.1 tarball but not with the 2.8.0 tarball and I cannot reproduce the issue, so it does seem like something that could be explained by security software actively hating 2.8.1