How to use orthorfinder results to generate input forms for fig2A plots

HongboDoll / TomatoSuperPanGenome

Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and constructed a pan-genome, revealing phylogenetic relationships and structural variation among Lycopersicon

47 stars 22 forks source link

How to use orthorfinder results to generate input forms for fig2A plots #1

Open Wyinghao opened 1 year ago

Wyinghao commented 1 year ago

Hi！ I read your work on tomato pangenome.I think that's a great article！I have a question I would like to ask you. About How to use the results of orthorfinder to produce the original form of fig2A in the article you provided.Could you provide a script for the conversion?

Looking forward to your response THANKS！

peanut-nu commented 7 months ago

Hi！ I read your work on tomato pangenome.I think that's a great article！I have a question I would like to ask you. About How to use the results of orthorfinder to produce the original form of fig2A in the article you provided.Could you provide a script for the conversion?

Looking forward to your response THANKS！

Have you solved this issue? I am also facing the same problem, could you please share the solution with me? Thank you very much.

HongboDoll commented 7 months ago

Hi,

There is a tool called pangp that may aid you

https://pangp.zhaopage.com/

Best,

Hongbo