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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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MOZ 2016-20 #422

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

Model run: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

QLLZ commented 1 year ago

Country data report

eclee25 commented 1 year ago

Convergence, fits, maps, Rhats and match to GAM input look okay.

Opinion: Approve

QLLZ commented 1 year ago

Config

Data pull:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 1 year ago

Failed stan model run log file

QLLZ commented 1 year ago

Rerun on dev_u_combs_fix

HASH: e56580fa5ddab00293e31ff90139351f80ae3f6c

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

In general, resultas look good, but modeled cases seem to be all overestimated compared to observed cases in who annual report.

eclee25 commented 1 year ago

Model diags look good but as Qulu says we seem to be systematically overestimating relative to the WHO annual reports. I think it may be because we have lots of weird censored outbreak report data... Could probably get a better data source from MOZ MOH if we think it's important.

Temp Approve - would like 2nd review

javierps commented 12 months ago

Sep 2023 Production run: all OK.

Suggestion: accept.

eclee25 commented 11 months ago

Approve